Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01776 ATGTTAGCCATTTTCCACAAAACTTTCGCACACCCACCTGAGGAACTTAACAGCCCTGCCTCTTTCACTGGCTCTAAGCCCCCTAAGCTTCCTCAAGAAACACTCAGTGACTTTCTTTCTCGTCATCCTCAAAACACTTTCTCTGTTAACTTTGGCCAAGCCGCTGTTCTTGCTTATGTTTCTCCCCATCGACCCTTTTCTATCCACCAAAGGCTGTTCTGTGGGTTTGATGACATATACTGTCTATTCTTGGGAACTTTAAACAATCTATGTGCACTGAATAAGCAATACGGTCTATCAAAAGGCTCAAATGAGGCTATGTTTTTGATTGAGGCGTATAGGACACTTAGGGACAGAGGTCCTTACCCAGCTGATCAGGTCCTTAAGGAGCTTGATGGCAGCTTTGCCTTTGTTGTTTATGATAGTAGGGCTGGTACTGTTTTTGCTGCCTTGAGTTGTTTGCGTGAATGGTATAAAGCTTTGGGAGGTTTTTGGATGTTAGGAAGTAGGAAGTTCTCCTTGTTTGGCCTAGGTGCTGATGGGGGAGTGAAACTCTATTGGGGAATTGCAGCAGATGGGTCAGTGGTGATATCAGACGATGTGGATGTCATCAAAGAAGGTTGTGCTAAATCATATGCCCCATTTCCAACAGGATGCATGTTCCATAGTGAAGGAGGTCTAATGAGTTTTGAGCATCCAATGAACAAGATGAAAGCAATGCCCAGAATTGACAGTGAAGGTGCCATGTGTGGAGCTAACTTCAAGGTAGATGTGTACACAAGGGTGAACAGCATCCCAAGGAGAGGCAGTGAAGCTAATTGGGCTGAATGGGACACAAACTAG 843 44.72 MLAIFHKTFAHPPEELNSPASFTGSKPPKLPQETLSDFLSRHPQNTFSVNFGQAAVLAYVSPHRPFSIHQRLFCGFDDIYCLFLGTLNNLCALNKQYGLSKGSNEAMFLIEAYRTLRDRGPYPADQVLKELDGSFAFVVYDSRAGTVFAALSCLREWYKALGGFWMLGSRKFSLFGLGADGGVKLYWGIAADGSVVISDDVDVIKEGCAKSYAPFPTGCMFHSEGGLMSFEHPMNKMKAMPRIDSEGAMCGANFKVDVYTRVNSIPRRGSEANWAEWDTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31356854 31358678 + ClCG11G018200.2 Cla11g01776 285598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01776 280 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 56 231 IPR029055 -
Cla11g01776 280 Pfam Aluminium induced protein 2 152 IPR024286 -
Cla11g01776 280 Pfam Aluminium induced protein 175 256 IPR024286 -
Cla11g01776 280 SMART DUF3700_2 2 256 IPR024286 -
Cla11g01776 280 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 169 275 IPR044828 -
Cla11g01776 280 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 1 152 IPR044828 -
Cla11g01776 280 CDD Wali7 2 256 - -
Cla11g01776 280 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 72 206 IPR029055 -
Cla11g01776 280 PANTHER BNAA08G14100D PROTEIN 169 275 - -
Cla11g01776 280 PANTHER BNAA08G14100D PROTEIN 1 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01776 - - - cmo:103493498 473.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00505 Cla-Chr5:4665908 Cla11g01776 Cla-Chr11:31356854 2.94E-75 dispersed
Cla05g00574 Cla-Chr5:5235843 Cla11g01776 Cla-Chr11:31356854 3.05E-50 dispersed
Cla06g00549 Cla-Chr6:6687157 Cla11g01776 Cla-Chr11:31356854 1.29E-49 dispersed
Cla01g02236 Cla-Chr1:36333483 Cla11g01776 Cla-Chr11:31356854 8.26E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g258 Blo03g00646 . Bda07g00290 . . . . . . . Cma01g01199 Cma09g00879 Car01g01024 Car09g00791 Sed05g2577 Cpe06g00702 Cpe02g00710 Bhi09g03397 Tan01g4415 Cmetu07g1424 . Hepe01g1373 Mch11g1086 . Cla11g01776 Cam11g1840 Cec11g1861 Cco11g1871 Clacu11g2002 Cmu11g1811 Cre11g2219 Cone6ag0133 Cone9ag0158 . . Lsi04g01321 Csa04g02359 Chy07g00088 . . . . . Bpe11g00488 Bpe01g00417 . . . Cmo01g01253 Cmo09g00868 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003847 1 1 4 2 2 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01776 Cla_Chr11 FPKM 9.92562 12.607215 10.426291 10.12011 14.343956 11.794692 14.815316 9.716041 9.323577 10.949955