Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01777 ATGGCCGACCGTTTCTTTCCAAACCAAATGCCACGCTTCCTCGCCGAAGCACCGGCGGACAAACTCGCAGCGTCCGATTCCGATTCCGATTCCGATTCTGCCAACCACACACTCATTCCCACAGAGCTTCTTTCGCTTCCCGATGCTGCACTTTTCAATCGCCTTAGACAGACAGCTCTCGACCTCAAAGAAACGGTCCTGAGAGAGACGTGGACGTTGAGTGGAAGGCACCCGCAGGATTATACTTTGTATACTGGAGCATTAGGGACAGCTTTCCTGGCTTTGAAATCCTTCCTAGTTTCTAAGAATGTGAATGATCTCAAGTTGTGCTCTGAGATTGTCACTGCCTGTGAGTCTGTATCTAGAGATTCGAGGCGCGTGTCATTTATCTGTGGCCGAGCTGGAGTTTGTGCTCTTGGAGCAGTTGCCGCAAAGCTCGCTAATGATGGAAGGCTCGTCGACCATTACTTGGAAAAGTTTAAAGATATCAAACTACCTAGTGATTTGCCAAATGAACTCCTATATGGCAGAGCAGGGTTCCTATGGGCCTGTTTGTTCCTAAACAAGCACATTGGTCGGAACACGATATCTAACGCTATTATGAGATCAGTGGTGGACGAAGTCATTGAGGCTGGTAGGGGATTGGGTAAGAAGAGCAAATCTCCATTGATGTATGAATGGCATGGGAAGAAGTACTGGGGTGCTGCCCATGGACTGGCTGGAATTATGCATGTCTTGATGAACATGGAACTAAAGCCAGATGAGGTTGAGGATGTCAAGAATACGCTACGTTACATGATTAAAAATCGATTTCCAAGTGGCAATTATCCTTCAAGTGAAGGAAAAGAATCTGACCGTCTGGTCCACTGGTGCCATGGGGCTCCTGGGGTTGCACTTACCCTCATAAAAGCAGCTGAGGTTTTTGGAGACGAAGAATTTCTGCAAGCTGCGGTAGATGCTGGGGAAGTCGTCTGGAACCGTGGTCTACTCAAACGGGTTGGCATCTGCCATGGAATTAGCGGTAACACGTATGTGTTTCTTTCACTTTACCAGTTGACGGGTGATCTCATATACTTATACAGAGCCAAAGCATTTGCATGCTTTCTGCATCAGAATGCACAAAAGCTAATATCAGAAGGGAAGATGCATTCTGGTGATTGCCCTTATTCCTTGTTTGAAGGAATTGGGGGAATGGCATATCTCTTTTTTGACATGATTGAGCCATATGCAGCAAAGTTCCCATCTTATGAACTCTAA 1257 46.54 MADRFFPNQMPRFLAEAPADKLAASDSDSDSDSANHTLIPTELLSLPDAALFNRLRQTALDLKETVLRETWTLSGRHPQDYTLYTGALGTAFLALKSFLVSKNVNDLKLCSEIVTACESVSRDSRRVSFICGRAGVCALGAVAAKLANDGRLVDHYLEKFKDIKLPSDLPNELLYGRAGFLWACLFLNKHIGRNTISNAIMRSVVDEVIEAGRGLGKKSKSPLMYEWHGKKYWGAAHGLAGIMHVLMNMELKPDEVEDVKNTLRYMIKNRFPSGNYPSSEGKESDRLVHWCHGAPGVALTLIKAAEVFGDEEFLQAAVDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYQLTGDLIYLYRAKAFACFLHQNAQKLISEGKMHSGDCPYSLFEGIGGMAYLFFDMIEPYAAKFPSYEL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31359404 31362341 + ClCG11G018210.1 Cla11g01777 285599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01777 418 SMART LANC_like_2 77 418 IPR007822 -
Cla11g01777 418 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Cla11g01777 418 PRINTS Eukaryotic LanC-like protein family signature 221 233 IPR020464 -
Cla11g01777 418 PRINTS Eukaryotic LanC-like protein family signature 267 282 IPR020464 -
Cla11g01777 418 PRINTS Eukaryotic LanC-like protein family signature 304 325 IPR020464 -
Cla11g01777 418 PRINTS Eukaryotic LanC-like protein family signature 349 367 IPR020464 -
Cla11g01777 418 PRINTS LanC-like protein superfamily signature 80 98 IPR007822 -
Cla11g01777 418 PRINTS LanC-like protein superfamily signature 171 186 IPR007822 -
Cla11g01777 418 PRINTS LanC-like protein superfamily signature 232 248 IPR007822 -
Cla11g01777 418 PRINTS LanC-like protein superfamily signature 287 307 IPR007822 -
Cla11g01777 418 PRINTS LanC-like protein superfamily signature 333 346 IPR007822 -
Cla11g01777 418 PRINTS LanC-like protein superfamily signature 388 405 IPR007822 -
Cla11g01777 418 PANTHER LANC-LIKE PROTEIN GCL2 1 418 - -
Cla11g01777 418 Gene3D - 1 418 IPR012341 GO:0005975
Cla11g01777 418 CDD euk_LANCL 83 414 - -
Cla11g01777 418 Pfam Lanthionine synthetase C-like protein 78 418 IPR007822 -
Cla11g01777 418 PANTHER LANC-LIKE PROTEIN 1 418 - -
Cla11g01777 418 SUPERFAMILY LanC-like 76 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01777 - - - cmo:103493496 737.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01658 Cla-Chr7:33858287 Cla11g01777 Cla-Chr11:31359404 7.37E-113 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g259 . Blo03g01538 . Bda09g00498 . Bpe08g01031 . . . . Cma01g01198 . Car01g01023 . Sed01g0663 . Cpe02g00711 Bhi09g03396 Tan01g4417 Cmetu07g0753 . Hepe01g1372 Mch11g1087 . Cla11g01777 Cam11g1841 Cec11g1862 Cco11g1872 Clacu11g2003 Cmu11g1812 Cre11g2220 Cone6ag0132 Cone9ag0157 . . Lsi04g01320 Csa04g02360 Chy07g00089 . . . . . . . Bma07g01188 . . Cmo01g01252 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002987 1 1 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 2 2 2 2 2 2 4 4 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01777 Cla_Chr11 FPKM 6.951207 7.894696 5.312215 6.566862 34.945862 26.966286 32.695858 4.443301 3.861748 4.508396