Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01778 ATGATGAACAAATCCGTGGACGAAGACGAAGAAGAAGAGTGTTTCTACGAGTCTCTTGATCGCATTGCCTCCTCAGGTTCATGTTCCACTTCCAATTCCGATGATGACAGAGATTCAAACGCCAACTCCCCTAATTATGATTCCGAGCACCCTTTTCCGATACCAAAATTCCCAATGGCTGTTTCCAACTATGATATTTGGATCTCCGAGCCGGCTTCTGTGTTGGAGCGCCGTAGCCGTCTTCTTCGAGAAATGGGTCTTAGCGGTGACCCTTCTCTTTCACGGGCTAATACGGCCTTGGAATTGGATCATAGAGAAAAGGGTGTTGGCGATTTTGATCGATCGGTGTCGTCGGATTATTTGACTAGTCAACAACAGCAGCCCCCTGCAATCATCCGCTCGAAATCGGATGGTGCTGCAGATTGTAGCAGGAATGCGAGCCCTTCACACCCTTCCGGCACCGATACTAATAACCAGTGTAATTATTCGTCCTCCATTAATTCTCCTTCAATTCTTTCATTTCATTCGGTCAATGAGACCACCACTTCATTTGCAAATAACCGTAATCGTGTAGTTGTTAAGTCTCGAAGCTGTAAGAGCGATGGAGCTCCATCGGTTTCTTTCGCTACTTCACAGCATAAGCCGCCTTCTGGGAGAAATTGTAGATGGGCGGATGAGATTCGAAGTGATTCCTTGGTTGTGAATGCCAATTCGGATCCTGATCCATCGTTGATGTCTCAGAATGGTGTGAATAAACGAGAGGTTAGCGAGGATTCGGCTTGTTCTACTAGTGGAAAGGCCAATGAGAAAGCCTGCACTATCAAAGATCTTGACAATGGGAAAGAGTTTGTTGTGAACGAGATTACTGAAGATGGTATGTGGAACAAGCTCAAGGAAGTGGGGACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGGCATTCGCCTATTGTTCAAGAACTGATGCGGCGGCAGAATGTGGAGGATGGTTGTAACGAAAATGTCGATTTAAATGTGAATGGAGATATCGGTAGCAGTTCGAAATTGAAAAAGAAAGGAGGCTGGTTTAAGAGTATAAAGAGTGTTGCTAGCACAGTGAAGGGCCAAAAGGAGAGACGTAGCAGTGATGAGAGGGATACTTCATCTGAGAAGGGTGGACGACGGTCAAGCTCTGCAACAGATGATAGCCAAGATGTTTCCTTTCATGGTCCAGAGAGAGTAAGAGTTCGGCAATATGGAAAATCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCCCACAGTGGGTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATTATTCATGTTTGGCAGGTCGTTGAGTCGGAGAAAAAGGGCGATCTACTGATAGAGAAACCTGAAGAAGGGAACTTGAGTTTCTTATTTGCAGCTAATGAGTCACCAGAGCCAACTTCACTATCTCCAAATGTCGATGGCCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGTCGGAAATCAGTGAGCTTGGAACATGTGATTGTGCCGGACACTGTATTTGGGCTTTCAGAAAAACCTATCTGTTCATTCCAGGGGCATCTTGATGTTGTGCTTGACCTATCTTGGTCCAAATCTCAGCATTTGCTCTCGTCTTCAATGGATAAAACTGTGCGGCTCTGGCACTTGTCAAGCAAATCCTGTTTGAAAATATTTTCGCACAGTGATTATGTAACTTGCATCCAGTTTAATCCTATTGATGATAGATACTTCATTAGTGGATCGTTAGATTCAAAAGTCCGTATATGGAGTATCCCAGATCGTCAAGTTGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGCTATACACCTGATGGCAAGGGTGCTTTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCTGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAGAACAAGAAGAAAAAATCTAGTCACAAGAAAATAACTGGGTTCCAGTTTGCTCCAGGAAGTTCTTCAGAAGTGCTCATTACATCTGCAGATTCACGCATTCGAGTGGTTGATGGTGTCGATCTGGTCCAGAGGTTTAAAGGGTTCCGAAATACAAACAGCCAAATCTCGGCCTGCCTTTCGGCGAATGGCAGGTATGTGATATCGGCCAGTGAGGACTCTCATGTTTACGTATGGAAGCATGAAGCAGATTCTCGACCGAGTAGGAGCAAAGGAGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCCGGATGTCTCTGTGGCTATTCCTTGGCCTGGTATGGGTGACACATGGGGACTTAACGACGATTATTGTGGAGATGACAATGTGATTGAAAATCATCACGATGAAGTCTTCTCCGCTAACCATCCCCCTTCACCGGTGGAGGCAGAAAACGGCAGTGAGGATTCACTGTTGGCTTCTGGTTGCACCAACAGCCCTCTTCATGGAACTCTTTCAAGTGCAACCAACAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCAGAGGAAAAGCTTGTTTTGAACACTCGGAACAACCGTAGCCCTCATTCCAGTATGGACATTGCCAGCGGAATGTTCCAAGGCTCATCAGCATGGGGTATGGTGATCGTAACTGCAGGTCTTCGAGGCGAAATCAGAACTTTCCAAAATTTTGGATTTCCAAGACAATGTTGGGTGAGATTTGTAATGTTAGCAGAATTAAGTTTCTTGTTACCCTGTGCTTGTGCTCGTCGGGCGGGGGCGATACCGGGAGCCAGTCTGGTGGAGAGTGGCGGGAAAAAGTATAGATTTGTGAAGGGAAAAACTGAAAAGGGTGATTTAGCTTCTCAAACCATCGATTTTGTATTCTCTGGTTGCTCCTTTTTTGTTCTAATGGCTCTCCAAGCTGCTTCTCTGGTTTCCCCTGCTCTCTCTGTTCCTAAAGAGGGGAAATCTTGTGTATGCTTGAAGGATTCTAGTTTTTTTGGGATTTCATTCTCCGATCATCTCAAATCTGAATTCACTTCATCTACATTGAGGTGTAAGATAGAATTGAACCAGCAGATTGGTGCAATCAGGGCTCAAACAACTGCTACCACAACTCCAGCAGTAAACAAAGCTGCCCCAGATGGGAAGAAAACTCTCAGAAAAGGTAGTGTTGTGGTCACTGGAGCCTCTTCTGGGTTGGGATTAGCCACAGCCAAGGCTCTGGCTGAAACTGGAAAATGGCATGTCATTATGGCTTGTAGAGACTTTCTCAAGGCTGAAAGAGCTGCCAAATCTGCTGGCATTGCGAAGGAAAACTACACTGTTATGCATTTGGACCTTGCCTCGCTCGACAGTGTTCGCCAGTTTGTCGACAACTTCAGGCAGTCAGGCAGGCCACTTGATGTTCTTGTGTGCAATGCTGCTGTTTACCTACCAACTGCTAAAGAGCCTACCTTCACTGCTGAAGGTTTTGAACTTAGTGTTGGAACTAACCACCTTGGTCATTTCCTCCTCTCCCGTTTGTTGTTAGAGGATTTGAACAAATCTGATTACCCCTCAAGACGGCTCATCATTGTCGGATCGATAACTGGGAACACAAATACCTTGGCTGGAAATGTACCTCCTAAGGCCAACCTTGGAGACCTCAGGGGACTTGCTGGTGGACTAAATGGCCTAAATAGCTCGTCGATGATCGACGGTGGTGAGTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTGTGCAACATGCTCACCATGCAAGAGTTTCACAGGCGGTACCACGAGGAAACCGGCATCACATTTGCTTCCCTCTACCCTGGATGCATTGCTACAACTGGTTTGTTCAGAGAGCACATTCCCTTGTTCAGATTACTTTTCCCTCCATTCCAAAAGTACATCACCAAGGGCTATGTTTCAGAAGAAGAAGCAGGGAAAAGACTGGCTCAGGTTGTGAGCGAGCCAAGCTTGACAAAATCAGGTGTGTATTGGAGCTGGAACAAGAACTCGGCTTCGTTTGAGAATCAGTTGTCTCAAGAAGCAAGTGATGTAGAGAAAGCTCGTAAAGTGTGGGAGCTGAGTGAGAAACTTGTTGGTTTGGCTTAA 4155 45.75 MMNKSVDEDEEEECFYESLDRIASSGSCSTSNSDDDRDSNANSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRSRLLREMGLSGDPSLSRANTALELDHREKGVGDFDRSVSSDYLTSQQQQPPAIIRSKSDGAADCSRNASPSHPSGTDTNNQCNYSSSINSPSILSFHSVNETTTSFANNRNRVVVKSRSCKSDGAPSVSFATSQHKPPSGRNCRWADEIRSDSLVVNANSDPDPSLMSQNGVNKREVSEDSACSTSGKANEKACTIKDLDNGKEFVVNEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNENVDLNVNGDIGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLIEKPEEGNLSFLFAANESPEPTSLSPNVDGHHEKKRRGRSSISRKSVSLEHVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDSKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVQRFKGFRNTNSQISACLSANGRYVISASEDSHVYVWKHEADSRPSRSKGVTVVRSYEHFHCPDVSVAIPWPGMGDTWGLNDDYCGDDNVIENHHDEVFSANHPPSPVEAENGSEDSLLASGCTNSPLHGTLSSATNSYFFDRISATWPEEKLVLNTRNNRSPHSSMDIASGMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPRQCWVRFVMLAELSFLLPCACARRAGAIPGASLVESGGKKYRFVKGKTEKGDLASQTIDFVFSGCSFFVLMALQAASLVSPALSVPKEGKSCVCLKDSSFFGISFSDHLKSEFTSSTLRCKIELNQQIGAIRAQTTATTTPAVNKAAPDGKKTLRKGSVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGIAKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSRRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDVEKARKVWELSEKLVGLA 1384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31362953 31376205 - ClCG11G018220.2 Cla11g01778 285600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01778 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 617 IPR001680 GO:0005515
Cla11g01778 1384 MobiDBLite consensus disorder prediction 140 161 - -
Cla11g01778 1384 PRINTS Glucose/ribitol dehydrogenase family signature 1281 1298 IPR002347 -
Cla11g01778 1384 PRINTS Glucose/ribitol dehydrogenase family signature 1073 1090 IPR002347 -
Cla11g01778 1384 PRINTS Glucose/ribitol dehydrogenase family signature 1148 1159 IPR002347 -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 111 161 - -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 116 132 - -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 369 394 - -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 235 262 - -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 492 517 - -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 200 217 - -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 22 53 - -
Cla11g01778 1384 PANTHER WD REPEAT DOMAIN 44 7 915 IPR040324 -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 369 415 - -
Cla11g01778 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 431 464 - -
Cla11g01778 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 464 IPR001680 GO:0005515
Cla11g01778 1384 SUPERFAMILY WD40 repeat-like 427 753 IPR036322 GO:0005515
Cla11g01778 1384 MobiDBLite consensus disorder prediction 196 219 - -
Cla11g01778 1384 PRINTS G protein beta WD-40 repeat signature 603 617 IPR020472 -
Cla11g01778 1384 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Cla11g01778 1384 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Cla11g01778 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 577 - -
Cla11g01778 1384 MobiDBLite consensus disorder prediction 22 47 - -
Cla11g01778 1384 SMART WD40_4 577 616 IPR001680 GO:0005515
Cla11g01778 1384 SMART WD40_4 670 709 IPR001680 GO:0005515
Cla11g01778 1384 SMART WD40_4 424 463 IPR001680 GO:0005515
Cla11g01778 1384 SMART WD40_4 536 574 IPR001680 GO:0005515
Cla11g01778 1384 SMART WD40_4 710 751 IPR001680 GO:0005515
Cla11g01778 1384 SMART WD40_4 619 657 IPR001680 GO:0005515
Cla11g01778 1384 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 7 915 - -
Cla11g01778 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 583 617 - -
Cla11g01778 1384 CDD LPOR_like_SDR_c_like 1071 1383 - -
Cla11g01778 1384 Pfam short chain dehydrogenase 1074 1216 IPR002347 -
Cla11g01778 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 583 IPR001680 GO:0005515
Cla11g01778 1384 Gene3D - 1062 1384 - -
Cla11g01778 1384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1069 1352 IPR036291 -
Cla11g01778 1384 Pfam WD domain, G-beta repeat 430 462 IPR001680 GO:0005515
Cla11g01778 1384 Pfam WD domain, G-beta repeat 725 751 IPR001680 GO:0005515
Cla11g01778 1384 Pfam WD domain, G-beta repeat 579 616 IPR001680 GO:0005515
Cla11g01778 1384 Pfam WD domain, G-beta repeat 538 573 IPR001680 GO:0005515
Cla11g01778 1384 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 1070 1384 IPR005979 GO:0016630
Cla11g01778 1384 Gene3D - 415 772 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01778 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1711.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00031 Cla-Chr1:231120 Cla11g01778 Cla-Chr11:31362953 1.77E-105 dispersed
Cla01g01526 Cla-Chr1:29773160 Cla11g01778 Cla-Chr11:31362953 6.71E-105 dispersed
Cla02g01717 Cla-Chr2:32068408 Cla11g01778 Cla-Chr11:31362953 0 dispersed
Cla04g00811 Cla-Chr4:23169565 Cla11g01778 Cla-Chr11:31362953 2.92E-06 dispersed
Cla10g01994 Cla-Chr10:35760210 Cla11g01778 Cla-Chr11:31362953 1.34E-23 dispersed
Cla11g01778 Cla-Chr11:31362953 Cla01g00160 Cla-Chr1:1644424 2.83E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01778 Cla_Chr11 FPKM 39.5 38.906738 8.904062 9.525515 4.286692 4.742215 3.682307 4.650039 5.573349 6.210428