Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01797 ATGATCATGGGGAGATTTAGCAGAAATGAAATGTCGATCATTCTTCTGGTGTTCATGTCTGGTTTGTTGCAGATCCACGGGGCCGATATGTTAACTTGTTACAGGAGCCAAAGCCCATGTCGCTTCAAGCAAATGCGTTGCCCAGCAGAATGCCCATCAAAATCACCATCAAACCATACTGACAAAGTTTGTTACGTCAACTGTGAATCGCCTGTATGCAAAGCAGAATGCAAAAGTTCAAAACCAAACTGCAACGGTCCTGGCTCGGCATGCTTGGACCCGAGGTTCATTGGTGCTGATGGTATTGTGTTCTACTTCCACGGAAAAAGCAATGAACACTTCAGCTTGGTATCTGATCCTGACCTGCAAATCAATGCGCGGTTCATTGGACTAAGGCCTGCAGGCAGATCCAGGGACTTCACATGGATTCAAGCTCTTGGTTTACTCTTCAATTCTCACTCCTTCTCACTTGAGGCCAAACGAGCAGCAACTTGGGACGACAAAGTCGATCACTTGAAATTTACTTACAACGGAAAAGAAGTAGTTATACCAGATGGTCGTCTCTCGCAATGGAGATCCTCAAAAAGCAATATTATAGTTCAAAGAACATCAACCAGCAATAGTGTCTTGGTTACTCTCCCTGAGATAGCAGAGATATCAGTTAACGTTGTACCGATTACTAAAGAAGACAATAGAATTCATAACTATCAGATACCAAAAGATGACTGTTTCACTCACTTGGAAGTTCAGTTCAGATTCCACGGCCTTTCGTCGAAGGTTGAAGGAGTGCTTGGAAAGACTTATCAGCCTGACTTTATTAACCCCGCAAAGCCAGGAGTTGCAATGCCTGTTGTAGGAGGTGACAAGGAGTACAGGACCTCATCGCTCCTCTCGGCCGACTGCAGTGCTTGTTTGTTTTCCCCTGCCAGAATCTCAAACAAAGTGGACCCAAAGATAACGCAAGATAGCTTCATAGACTGCTCTGGAGGAAGCACAAGTGGAAATGGAATAGTTTGCAAAAAATAA 1026 44.35 MIMGRFSRNEMSIILLVFMSGLLQIHGADMLTCYRSQSPCRFKQMRCPAECPSKSPSNHTDKVCYVNCESPVCKAECKSSKPNCNGPGSACLDPRFIGADGIVFYFHGKSNEHFSLVSDPDLQINARFIGLRPAGRSRDFTWIQALGLLFNSHSFSLEAKRAATWDDKVDHLKFTYNGKEVVIPDGRLSQWRSSKSNIIVQRTSTSNSVLVTLPEIAEISVNVVPITKEDNRIHNYQIPKDDCFTHLEVQFRFHGLSSKVEGVLGKTYQPDFINPAKPGVAMPVVGGDKEYRTSSLLSADCSACLFSPARISNKVDPKITQDSFIDCSGGSTSGNGIVCKK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31635165 31636280 - ClCG11G018390.1 Cla11g01797 285619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01797 341 Pfam Root cap 250 306 IPR009646 -
Cla11g01797 341 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 7 341 - -
Cla11g01797 341 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) PROTEIN-LIKE PROTEIN 7 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01797 - - - csv:101217774 655.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00628 Cla-Chr2:7037582 Cla11g01797 Cla-Chr11:31635165 2.71E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g281 . . . . . Bpe08g01042 . . . . . . . . . . Cpe02g00721 . . . . . . . Cla11g01797 Cam11g1863 Cec11g1887 Cco11g1893 Clacu11g2026 Cmu11g1832 Cre11g2238 Cone6ag0118 . . . . . . . . . . . . . Bma07g01197 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011478 0 1 0 2 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01797 Cla_Chr11 FPKM 17.08713 17.853125 16.787922 18.567533 18.173315 14.411393 17.961185 20.914145 20.837418 20.157955