Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01798 ATGATGGATAGAACCCCTGGTTTAGTTTTGAAGCGTTCCTTGCGGAAGAAAGCTACTTCGCGAAATTATGACGAGGATTTAATGGATGAGTTTGTCGAGAAGCATTTAGGGGGTGTTTCCAAGAAGAAGAAGAGCAAAACGGCAGAGGATCTAGAGAAAGAGACTGAAATTGAGGCCATGATAGCACTATCGGTTGGATTCCCAATCGATGCCCTGCTTGAGGAGGAAATTAAAGCGGGGGTGGTGAAGAAATTGGGTGGGAAAGAGCAGAATGATTACATTGTTGTTAGAAATCATATCCTCGCTAGGTGGCGGGGTAATGTACGAATGTGGCTTTCGAAAGGGCAGATTAAAGAAACTGTGAGCAATGAGTATGAGCATTTGATTAGTGCAGCATATGATTTCCTTCTGTACAATGGATATATAAACTTTGGTGTTTCACCAAACTTTACATCTCAAGTGTCAGAGGAGGGATCTGAAGGAACTGTGATTATTATCGGTGCAGGCCTTGCCGGGTTAGCTGCAGCTCGGCAGCTATTATCATTTGGTTTTAAGGTTATTGTTTTAGAAGGTAGGAATCGACCTGGTGGAAGAGTTTATACACAAAAGATGGGGCAAGAGGGCAAATTTGCTGCTGTAGATCTTGGTGGCAGTGTCATTACTGGTATCCATGCTAATCCTCTCGGAGTTCTAGCTAGACAACTTTCCATTCCACTTCATAAGGTTAGAGATAATTGTCCATTGTATAAACCTGATGGAACACTGATCGGAAAGGATATTGATGCCAAGATTGAGTTTATTTTTAATAAATTGCTAGACAAAGTGACTGAACTGAGAAAGATTATGGGAGGATTGGCAAATAACATTTCTCTTGGAACCGTTCTAGAAAAACTCAGGCAATTGTATGCTGTGGCTCGGAGTAAGGATGAAAGACAACTTCTTGATTGGCATATAGCAAACTTGGAATACGCAAATGCAGGATGTGTTTCAAATTTGTCTGCTGTGCATTGGGATCAAGATGATCCTTATGAAATGGGCGGCGACCATTGCTTCCTAGCAGGAGGTAATGGGAGATTGATAAAAGCATTATGTGAAGGAGTTCCAATATTTTATGGGCAGGTTGTTGACACTATTAAATATGGAAGTGAAGGAGTAGAAGTAATAGCTGGAGATCAAGTGTTTCAAGCTGATATGGTCCTGTGCACGGTTCCACTTGGGGTTCTGAAGCGAAAGCATATCAGATTTGAACCAGAGTTACCTAAAAGGAAACTGGCAGCAATTGAGCGACTGGGTTTTGGATTATTGAATAAAGTTGCAATGACTTTTCCTCATGTTTTCTGGGGGGAAGACCTAGATACATTTGGATGTCTCAGAGAGCATTGCCATCAGCGAGGGGAGTTCTTTTTGTTTTATGGTTACCATACTGTTTCCGGAGGTGCAGTTCTTATAGCTCTAGTTGCTGGAGAAGCTGCTGAAGCATTTGAATGCACGGATCCAACTGTGTTGCTCCACCGGGTTCTTGGAATTCTCAGAGGCATATTCAGCCCCAAGGGGATTGACGTACCAAATCCAATACAGTCAATATGCACAAGATGGGGCAGGGATCCATTTTCTTACGGCTCATACTCTCATGTTCGAGTGGGTTCCACTGGCAGCGATTACGACATTCTTGCAGAGAGTGTGTGGAACAGATTATTCTTTGCTGGTGAGGCCACAACTAAGCAATATCCAGCCACCATGCATGGTGCCTTCTTGAGTGGGCTAAGAGAAGCTTCATGTATTTACCAAGCTACTCGGGGACGATCAAACAATTCAAGGAAGTACATGCCGAAAAGTCTCAGACATGATATTCTGGCGGATCTTTTCAGGAAACCTGACATTGAAATTGGAAATCTGTCCTTTATTTTCAATTCCTTGGTAGATGATGAAAAATCAATGGGGGTCATGAAAATCACATTCAGAGGCAAGGGAGAAAGTTCTAATGACGAAGAATTGGCAGACAATTGTGAAGACCCCTCACAACAACAGCTGCTGCTTTACACAATTGTATCCCGTGAACAGGCACGTGCGCTGCAACTTGCGATTGAAGAGGATGAAAGTAGACTGCCATATCTAGTGAAAGATTTTGGCTTAAAGCTGATGGGACCCAGTGCCTTGGCTAATATCGGTAACTCGTTGATTTCTAGTATTGCCGGTGCTCGAAGAGGCCGGGGTAGGAATCGGTTGTCTGCTGGACAACCACAACTGCAACCCCAGCCCCAGCCGCAACCACAACTGCAGCCCCAGCTGCAATATCAACCCAAGCCCCAGCCACAACCACAACTGCAGCCCCAGCCGCAATATCAATCCGAGCCCCAGCTGCAACCACTACCCCAACCCCAACCCCAACTACAACTACAACCCTAG 2406 44.31 MMDRTPGLVLKRSLRKKATSRNYDEDLMDEFVEKHLGGVSKKKKSKTAEDLEKETEIEAMIALSVGFPIDALLEEEIKAGVVKKLGGKEQNDYIVVRNHILARWRGNVRMWLSKGQIKETVSNEYEHLISAAYDFLLYNGYINFGVSPNFTSQVSEEGSEGTVIIIGAGLAGLAAARQLLSFGFKVIVLEGRNRPGGRVYTQKMGQEGKFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGTLIGKDIDAKIEFIFNKLLDKVTELRKIMGGLANNISLGTVLEKLRQLYAVARSKDERQLLDWHIANLEYANAGCVSNLSAVHWDQDDPYEMGGDHCFLAGGNGRLIKALCEGVPIFYGQVVDTIKYGSEGVEVIAGDQVFQADMVLCTVPLGVLKRKHIRFEPELPKRKLAAIERLGFGLLNKVAMTFPHVFWGEDLDTFGCLREHCHQRGEFFLFYGYHTVSGGAVLIALVAGEAAEAFECTDPTVLLHRVLGILRGIFSPKGIDVPNPIQSICTRWGRDPFSYGSYSHVRVGSTGSDYDILAESVWNRLFFAGEATTKQYPATMHGAFLSGLREASCIYQATRGRSNNSRKYMPKSLRHDILADLFRKPDIEIGNLSFIFNSLVDDEKSMGVMKITFRGKGESSNDEELADNCEDPSQQQLLLYTIVSREQARALQLAIEEDESRLPYLVKDFGLKLMGPSALANIGNSLISSIAGARRGRGRNRLSAGQPQLQPQPQPQPQLQPQLQYQPKPQPQPQLQPQPQYQSEPQLQPLPQPQPQLQLQP 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31641299 31644786 + ClCG11G018400.1 Cla11g01798 285620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01798 801 ProSiteProfiles SWIRM domain profile. 52 153 IPR007526 GO:0005515
Cla11g01798 801 SUPERFAMILY FAD-linked reductases, C-terminal domain 431 543 - -
Cla11g01798 801 Pfam Flavin containing amine oxidoreductase 170 594 IPR002937 GO:0016491
Cla11g01798 801 Gene3D - 58 156 IPR036388 -
Cla11g01798 801 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 37 737 - -
Cla11g01798 801 Pfam SWIRM domain 72 144 IPR007526 GO:0005515
Cla11g01798 801 MobiDBLite consensus disorder prediction 737 801 - -
Cla11g01798 801 Gene3D - 245 550 - -
Cla11g01798 801 SUPERFAMILY FAD/NAD(P)-binding domain 162 597 IPR036188 -
Cla11g01798 801 MobiDBLite consensus disorder prediction 750 801 - -
Cla11g01798 801 Gene3D - 163 592 IPR036188 -
Cla11g01798 801 PANTHER FLAVIN MONOAMINE OXIDASE 37 737 - -
Cla11g01798 801 SUPERFAMILY Homeodomain-like 54 153 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01798 - - - csv:101217308 1390.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01028 Cla-Chr7:26716586 Cla11g01798 Cla-Chr11:31641299 1.95E-45 dispersed
Cla08g00787 Cla-Chr8:20306119 Cla11g01798 Cla-Chr11:31641299 0 dispersed
Cla08g01440 Cla-Chr8:27265738 Cla11g01798 Cla-Chr11:31641299 3.78E-87 dispersed
Cla11g01798 Cla-Chr11:31641299 Cla11g01622 Cla-Chr11:29906113 7.68E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g282 . Blo03g01530 . Bda09g00486 . . . . . . . . Car01g01002 . . Cpe06g00714 Cpe02g00722 Bhi09g02001 . . . Hepe01g1358 Mch11g1108 . Cla11g01798 Cam11g1864 Cec11g1888 Cco11g1894 Clacu11g2027 Cmu11g1833 Cre11g2239 . Cone9ag0142 . . Lsi04g01286 . . . . . . . . . Bma07g01198 Bma14g00189 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004494 2 2 2 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62089 PF01593 Amino_oxidase 2.00E-90 CL0063 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01798 Cla_Chr11 FPKM 9.218893 8.99498 9.286974 9.430731 11.780852 11.100026 12.098849 2.700289 2.768446 2.963705