Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01800 ATGTGGAGCTTATCCTCCTCTTTCCTTTCTTATCCGTCGCCTAATTTCAGAGTTTCCGTTCCGGCGGCCACCCTTCGCTCCGGCACTTCTTTACCGGTGCCCCTCGATCGGCAACATTGCACTTCCGACTCCCCATTTGCTCCGGAGGTTGTTAAGGCGGTAGACTCCTTGCAGTATGAATTCAGGGCAGTGGATAATTTGGTGGCTCGTAACTCTGCTAAAGTTCTCAAAGCCTTTCAGAATGCTCGGTTAGGATCTCATCATTTTGGAGGATCCACTGGTTATGGTCATGATGAAGCTGGAGGTCGTGAGGCACTTGACAATGCTTTTGCTGAGATAGTTGGAGCAGAATCCGCAATAGTCCGATCACAGTTTTTCTCAGGTACTCATGCTATTACGTGTGCTTTATTTTCACTTTTGAGGCCGGGGGATGAGCTTTTGGCAGTAGCTGGTGCTCCATACGACACACTAGAAGAGGTCATTGGGAAAAGAGATTCTCAGGGGCTGGGTTCTTTGAAAGATTTTGGAGTAGAGTATCGAGAAGTTCCACTTGCTGAGGACGGTGGACTTGACTGGGAAAAACTTGCATGTGCTTTGAAACCTCAAACAAAATGTGCGCTCATACAAAGGTCATGTGGTTATTCTTGGCGGCGAAGTTTAAGTGTTGACGAAATAGGAAAAGCAATAAGACTGATCAAGATGCAAAACCCTGATTGCTTGGTGATGGTGGATAACTGTTATGGAGAATTTGTGGAAACCACTGAACCTCCAACAGTGGGCGCGGATTTAATTGCAGGAAGTTTGATAAAAAATCCTGGTGGAACGCTTGCACCTTGTGGCGGATATGTTGCAGGTCGTGACAAATTGGTGAAGGCGGCTGCAGCTCGTTTATCTGCACCTGGCTTGGGGGTGGATTCAGGCTCTACCCCTGGTGATATCATGAGGACATTTTTTCAAGGACTATTCCTTTCACCTCAAATGGTTGGTGAGGCAGTTAAGAGAAGCTCCCCTGTTGCTTCGTTTACTAAACCAGTTCCAGGAATAACTCCTGGCTATGCATCAGAGGTGATCTTTGCTGATGGAACATTCATTGATGGGAGCACTAGTGAGCTTTCTTGCGACGGACCTCTGAGAGAGCCATTTGCCGTCTTTTGCCAGAGTGTACAAGGCTTAGTTGGCTTCGCTTTAATGCATGGTACCTCTAGTATGCAAGGGTCGGAGCGGAAACCTTGCCTAGAAAATTTACCGGGATCAGTATTCTCATTATGGCTCCTTACCCAACATCTGTCCAACTGGAAAAAACCAGCGGAACAAAAGGCCATTGTTATTATAATTCTTATGGCTCCTTTATATGCCGGTATCTCCTACATTGGTCTGTTGGAATTTATGGCAAGCAGTACTTTCTTTTTGTTTTTGGAATCAATTAAGGAATGTTATGAGGCTTTGGTGATATCTAAGTTCTTGAGTTTACTCTACAGCTACTTGAATATATCCATAAGCAAAAACATTGTGCCAGATGAGATCAAAGGTAGAGAAATCCACCATACTTTTCCAATGACCCTCTTTCAGCCTCACAGTGCTCGATTGAATCATCACACGTTGAAGCTTCTCAAGAACTGGACCTATCAATTTGTGGTGATTCGTCCTGTATGTTCCATCTTGATGATTGCTCTTCAACTAATTGATGTATATCCAAGCTGGCTCAGTTGGACATTTACTATCATATTAAATGTCTCAGTGTCACTTGCACTGTATTCCCTGGTGGTTTTCTATCATGTATTTGATAAGGAGTTGAAACCACATAGCCCTCTTGCGAAGTTCTTGTGCATCAAAGGGATTGTCTTTTTCTGCTTCTGGCAGGGAATCGTTCTTGAGATGCTTGCTGCAGTGGGCATAATCAAAGCAGAACATGCCTGGTTTGATGTTGAACACATAAATGAAGCCTTACAAAATACTCTAGTTTGTGTGGAGATGGTTTTCTTTGCGATGATTCAGATGTCTGCATACAGTGCTAGCCCCTACAAATCTAAATCTGCAGCAAAATCTAAAGTGGAGAAGAAGGATGAGTGA 2070 44.2 MWSLSSSFLSYPSPNFRVSVPAATLRSGTSLPVPLDRQHCTSDSPFAPEVVKAVDSLQYEFRAVDNLVARNSAKVLKAFQNARLGSHHFGGSTGYGHDEAGGREALDNAFAEIVGAESAIVRSQFFSGTHAITCALFSLLRPGDELLAVAGAPYDTLEEVIGKRDSQGLGSLKDFGVEYREVPLAEDGGLDWEKLACALKPQTKCALIQRSCGYSWRRSLSVDEIGKAIRLIKMQNPDCLVMVDNCYGEFVETTEPPTVGADLIAGSLIKNPGGTLAPCGGYVAGRDKLVKAAAARLSAPGLGVDSGSTPGDIMRTFFQGLFLSPQMVGEAVKRSSPVASFTKPVPGITPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQSVQGLVGFALMHGTSSMQGSERKPCLENLPGSVFSLWLLTQHLSNWKKPAEQKAIVIIILMAPLYAGISYIGLLEFMASSTFFLFLESIKECYEALVISKFLSLLYSYLNISISKNIVPDEIKGREIHHTFPMTLFQPHSARLNHHTLKLLKNWTYQFVVIRPVCSILMIALQLIDVYPSWLSWTFTIILNVSVSLALYSLVVFYHVFDKELKPHSPLAKFLCIKGIVFFCFWQGIVLEMLAAVGIIKAEHAWFDVEHINEALQNTLVCVEMVFFAMIQMSAYSASPYKSKSAAKSKVEKKDE 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31654095 31664718 + ClCG11G018420.2 Cla11g01800 285622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01800 689 SUPERFAMILY PLP-dependent transferases 59 333 IPR015424 -
Cla11g01800 689 Gene3D - 98 308 IPR015421 GO:0003824
Cla11g01800 689 Pfam Methionine gamma-lyase 52 334 IPR009651 -
Cla11g01800 689 Pfam Organic solute transporter Ostalpha 419 674 IPR005178 -
Cla11g01800 689 Gene3D - 47 97 - -
Cla11g01800 689 PANTHER - 330 391 IPR009651 -
Cla11g01800 689 PANTHER - 1 334 IPR009651 -
Cla11g01800 689 Gene3D - 330 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01800 - - - csv:101215148 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00356 Cla-Chr2:3469473 Cla11g01800 Cla-Chr11:31654095 1.88E-28 transposed
Cla02g01439 Cla-Chr2:28931024 Cla11g01800 Cla-Chr11:31654095 6.87E-26 transposed
Cla08g00665 Cla-Chr8:18931191 Cla11g01800 Cla-Chr11:31654095 1.51E-24 transposed
Cla11g00127 Cla-Chr11:1630585 Cla11g01800 Cla-Chr11:31654095 1.06E-28 transposed
Cla11g01800 Cla-Chr11:31654095 Cla03g00524 Cla-Chr3:5786375 4.17E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g284 . Blo03g01523 . . . . . . . . . . . . . Cpe06g00715 . Bhi09g01998 Tan01g4450 . . Hepe01g1356 Mch11g1110 . Cla11g01800 Cam11g1866 Cec11g1890 Cco11g1896 Clacu11g2029 Cmu11g1835 Cre11g2242 . . . . Lsi04g01284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006193 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 5 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01800 Cla_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0