Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01802 ATGAATGAGAAGGCCAACGTTACCAAGGAGCTCAACGCCCGCCACAGAAAGATATTAGAAGGGCTTCTTAAGCTGCCAGAAAATAGGGAGTGTGCTGATTGCAAAGCTAAGGGACCACGATGGGCTAGTGTTAATTTAGGCATTTTTATATGTATGCAATGTTCTGGGATCCACAGAAGTCTTGGTGTTCACATATCAAAGGTAGTGGTACGGTCTGCTACCTTGGACACTTGGCTTCCAGAGCAGGTTACTTTTATACAATCAATGGGGAATGAGAAGGCAAACAGTTATTGGGAGGCGGAGCTACCACCAAATTATGATAGAGTTGGGATTGAGAATTTTATTCGTGCAAAATATGAAGACAAGAGATGGGTTCCTAAGGATGGCAAACCAAGATCACCATCTCGAGTACAGGAGGAAAAGCCTTCTTTGCATGGGCATAGGCCTGCAGAAAGAAGTGGGTCAGGGTATTCAGGCCATTCTGAAAATTTGTTTGAGGAAAGGAAAAGGGTTCAAGCTCATAGTGTGAAGGAGAGTATACCTGCCTCGAGAGTTAGTCTTCCTGTTCCTCCCAGAGGACCTGAACAAGTTGCTCCAGCGCCCAAACCACGCCAGGAGCAAAAACCTGAACCAGTTGTACAGCAAGCTGAAGCAACGAAACAGACTATAAATGATGCCCCAGCTGTCTCTCCTCGAAAAGTTGATTATGCTACTGATCTTTTTAACATGCTATCCTTTGATGGACCCTCTGACAATGGTTCGGCAGCTGTTTCTACAGATGATAGTGCATGGGCTGGCTTCCAGTCTGCTGAAGAAGCATCATCAGCAGAGAAACCTGGTCCAGCAAAACCAGCTGAAGCCATTACCCAATCCACTTCTGGAATTGAGGATCTTTTCAAAGATACAACTACAGTTTCACCTTCTATAGTTCCCGAAAAACCTGTGAAAGATGTTAAAACTGATATAATGAGTCTTTTTGAAAAGTCCAGTATGGTCTCTCCATTTGCTATGCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTTCTCATGGCCGCTGCAGCTAAATCAGCTGCTGGAGACACAAAATTTAGCAATACTTCTCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTTCTCATGGCTGCTGCAGCTAAGTCAGCTGCTGGGGACGCAAAATTTAGCAGTACTCAAGCCTCTGTCCCCAATGGTACCAATGTTCCTCCTCAAAGTTGGCCAAATGTTGCCTACCCGATTCCTGGACTGATGATGCAAATAGGTGCCCAGGGTGGGCCACAAACTACTGTGCAGGCAATGAACAGGGGGCTGGCAAATCCAGTTGGGAGTTCTGTTCCATATCCAACATCTAGCCTTTATAGCCTGGGGCAAGCTTCTTCAGTGCCGGCGAATGGTGTGACCCCCATAGCAAAAAATAAACCTCAATCGACAGCGTCGGTATCATCAGCTACTCCTTCACAGTCGGGAAAAGAGTACGATTTCTCCTCTTTAACACAAGGTATGTTTTCAAAACATTAA 1551 45.52 MNEKANVTKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVVVRSATLDTWLPEQVTFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVPKDGKPRSPSRVQEEKPSLHGHRPAERSGSGYSGHSENLFEERKRVQAHSVKESIPASRVSLPVPPRGPEQVAPAPKPRQEQKPEPVVQQAEATKQTINDAPAVSPRKVDYATDLFNMLSFDGPSDNGSAAVSTDDSAWAGFQSAEEASSAEKPGPAKPAEAITQSTSGIEDLFKDTTTVSPSIVPEKPVKDVKTDIMSLFEKSSMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAAGDTKFSNTSHQQQLAMLAQQQSLLMAAAAKSAAGDAKFSSTQASVPNGTNVPPQSWPNVAYPIPGLMMQIGAQGGPQTTVQAMNRGLANPVGSSVPYPTSSLYSLGQASSVPANGVTPIAKNKPQSTASVSSATPSQSGKEYDFSSLTQGMFSKH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31674527 31680609 + ClCG11G018450.2 Cla11g01802 285624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01802 516 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Cla11g01802 516 MobiDBLite consensus disorder prediction 125 230 - -
Cla11g01802 516 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 369 516 - -
Cla11g01802 516 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Cla11g01802 516 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 368 - -
Cla11g01802 516 CDD ArfGap 19 119 - -
Cla11g01802 516 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Cla11g01802 516 SUPERFAMILY ArfGap/RecO-like zinc finger 15 127 IPR037278 -
Cla11g01802 516 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Cla11g01802 516 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Cla11g01802 516 PRINTS HIV Rev interacting protein signature 70 91 IPR001164 GO:0005096
Cla11g01802 516 MobiDBLite consensus disorder prediction 267 295 - -
Cla11g01802 516 MobiDBLite consensus disorder prediction 212 226 - -
Cla11g01802 516 MobiDBLite consensus disorder prediction 474 516 - -
Cla11g01802 516 MobiDBLite consensus disorder prediction 125 148 - -
Cla11g01802 516 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Cla11g01802 516 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 368 IPR044520 GO:0005096
Cla11g01802 516 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 369 516 IPR044520 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01802 K12486 SMAP; stromal membrane-associated protein - csv:101214277 848.966
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01468 Cla-Chr1:29223170 Cla11g01802 Cla-Chr11:31674527 2.54E-68 dispersed
Cla07g01131 Cla-Chr7:28182184 Cla11g01802 Cla-Chr11:31674527 5.15E-23 dispersed
Cla09g01127 Cla-Chr9:12448918 Cla11g01802 Cla-Chr11:31674527 4.69E-19 dispersed
Cla11g00235 Cla-Chr11:2709253 Cla11g01802 Cla-Chr11:31674527 5.13E-17 dispersed
Cla11g01802 Cla-Chr11:31674527 Cla01g00758 Cla-Chr1:8847181 1.74E-24 dispersed
Cla11g01802 Cla-Chr11:31674527 Cla03g00588 Cla-Chr3:6693553 1.78E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g290 . . . . . . . . . . . . Car01g01000 . . Cpe06g00717 Cpe02g00724 . . . . . . . Cla11g01802 Cam11g1868 Cec11g1892 Cco11g1898 Clacu11g2031 Cmu11g1836 Cre11g2243 Cone6ag0115 Cone9ag0133 . . Lsi04g01282 . . . . . . . Bpe11g00502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005696 1 1 2 2 2 0 2 1 0 1 1 1 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01802 Cla_Chr11 FPKM 172.319885 196.588837 12.511964 11.722098 81.985039 87.456108 77.516106 1.946819 2.468362 1.41753