Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01804 ATGGAGGTTTGTTTCTCAACGGAATTGCCCTCTTTCGATTTGCGGATTGCTGTTGCAGAAGAGGCTGGTGTTTTTTGGGTTGAGAGTGTGGTGAATTTGGGGTGGAATTCTGTGAAATTTTGGAATTTGAAGTACTGGGGTTTTGGCAAAATGATGTTATCCGCGTCGCCTTCGGCAATAGCTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGAAGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCGCCGGTGAAGCGGGCTTTACCCGTCAATTTCAGGGTTAATGATGACGGTTCCTCAGAGTGCTCTATTAATGTCTTTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTGGGTAACTTTGCATTCAGGAGAATAAAGGGAGATCAAGACGATGAATCGCCTTACATGGTAGCTTCAGAAAATGATAATAGAGATCAAGTGTATGGCTCGAATGGTGCAAATATTCAAGGGTCTAACTGGGAGGACAATATCAGTTATTTTCTTCATAAGAAACTCCGGGTTTGGTGTCAACTTCCAACTGGACAATGGGAGTTAGGAACTATACAGTCAAACAGTGGGGTGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTGTTAAAGTTTCAACAGTAGATCTTTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGCACAGCTCGGTTATTTGAATGAGCCTTCGGTTATTCACAGTCTCCAGAGAAGATTTTCTCGGGATAAAATTTATAGTAATGCTGGGTCAGTTTTGATTGCAGTCAATCCCTTGAAAGACACTAAACAGTATGGAAATGGATTAATTACAGCCTATAGACAGAGAGTCATGAATGACCCTCATGTTTATGCTATAGCTGATTCTGCCTATTCTGCGATGATGCAAGATGAAGTTAATCAATCTATTATCATCAGTGGAGAAAGTGGAGCTGGAAAAACTGAGACAGCAAAAGCTGCAGTTCAATACCTGGCTGCTCTTGGTGGCGGCAGTGGCATAGATGATAGAATCCCACAGGCGAATGTTATACTGGAAGCATTTGGGAATGCTAAAACCTCCAGAAACAACAATGCTAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAGACATTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTTTATCAACTTTGTGCTGGAGCATCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCTAGTGAGTACAGTTACCTTAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATATTCTTGTGGAAGCCCTAGATACACTTCAATTCACAAAAGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCGGTGTTGTGGATAGGAAACATTACGTTTCAAACAATTGATAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGTTGCAGTCCTAATGAGCTTAAGTTAGTTTTGTCGACCCACAAAGTGCAATCAGGCAACGGCAGCATTGCTAAAAAATTGACATTACGCCAGGCAACCGATGCAAGAGATGCTTTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAAGAACGGAGCATTCTGGAAGATCCATAAATATTCTTGACTTCTATGGGTTTGAGTCATTTAAGGCATGTTCTTCACTTATTCTATTCATCTATAAGAATGGCTTCGAACAGTTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTATGAGGCACCTGTTCAAACTTCAGCAGGAGGACTATGAATTTAATGGGGTCGATGGCACAAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAACCTCTTGGAGTTCTAGCTTTGTTGGACGAAGAGTTAAATTTTCCCAAGGCTACAGATCTTACATTTGCTAATAAACTAAAGCAACACTTTAAGTCTCAACCTTGCTTTAAAGGGGAAAGAGGTAGGGCTTTTGGTATTCGCCATTATGCTGGAGAGGTTGTATATGATACAAATGGGTTTTTGGAGAAGAATAGAGATCTGCTGCATTCCGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTACTTGCCTCAAAACTGATTAACCATTCCCAGAAACCAACAGTTTCAATGTGCTCTACAGAAGTAGTAGAATCCCCCGAGCCAGGTGTTGGTACCAAGTACAAGCTTCTACTATTTGACCTATTTCATAAATTGGAGTACACCAGCCATCATTTCATTTGTTGCATAAGGCCGAACAGAAATCAAGTTGGTGGCTTATTTGAGGAGGACCTTGTCCTACAACAGCTTCGGTACTGTGGAATTTTGGAAGTTGTGAGAATTTCAAGATCTGGATATCCTACCAGAATGATGCATCACGAATTTGCTGGAAGGTATGGATTCCTCCTTAAAGAAACTGGTGCATCTCGAGATCCATTGAGTATATCAATTGCTGTTCTACAACAATTTAATGTCCACCCCGAGATGTACCACGTTGGTTATACCAAACTATTTTTCCGAACTGGGCAGATTAGGGCATTGGATGAAAGGAGGAAGCAAGTTATGCAAGGCATCCTAGGGGTACAAAAGTACTTTCGTGGTTGCCATTCCCGTGGCAACTTCCATGATCTTAAGCAAGGGGCCACTACCTTACAATCATTTATTCGTGGTGAAAATGCCAGAAGGAGATGTACCGTTAAGGTGAAGAGGTTCTCATTCGTTGTGTATGCTTTTAGCGTTCCTAAGAAGGCTTACGAACTCCAGGGAATCATACGTTTACAATCTGTCATACGTGGTTCATTGGCTCGAAAGCATTTTCGGAGCATGCGTGATTCAAAGAGGGATTTTCCTGAAAACAAGAAATCTAAACTGACAACAGGCGGAAGGGTTTCAGAGGAAGAATTTCAAGAACGGGTTCAATCCTTGCCAACAACTCTGACTGAGCTTCAAAAGAGGGTCCTGGAGGCAGAAGCAACCATAGAGAAAAAGGAAGGGGAAAATGCTGCAATGCGGGAGCAAGTAAAACAATTCGAGTCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTGCTGAAAATGTAACCTGTCCACCAGGAAGAATTGATGCTGGTAACTCACCACCTCACTATTATGATTCTGAGGATACAACGTCAATGGGATCCCGAACACCTGGTGGTACCACACCTATAAAGGCTTCTGGAATTTCTGAAGTTGGAGCAGGCCGAGAAATGAATGGTACTTTAGTGGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCGAAGAACTGCATTTGACGATGATGCCAAAGCTTTAATTGAAGCAAAATCAGGTCAGGCACAGACAGGGTCTAATTTAAATCCAGATGAAGAATACCGTAAAATTAAAGTCCGATTTGAAGCATGGAAAAAAGAGTACAAGGCTAGATTAAGGGAAACAAAAGCTAAGGTTCATCATAAACATGGTCATTTTGAAGTTGATAAACTTCGTCGAAAATGGTGGGGAAAGTTCTCAAAAGCATCATAA 3810 41.73 MEVCFSTELPSFDLRIAVAEEAGVFWVESVVNLGWNSVKFWNLKYWGFGKMMLSASPSAIARSSLEEMLDSLRRRDEIEKPKDLPPALPSRPTSKARIPPVKRALPVNFRVNDDGSSECSINVFNGREDAMRKENGLGNFAFRRIKGDQDDESPYMVASENDNRDQVYGSNGANIQGSNWEDNISYFLHKKLRVWCQLPTGQWELGTIQSNSGVEASVMLSNKKVVKVSTVDLLPANPDIVEGVDDLAQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNGLITAYRQRVMNDPHVYAIADSAYSAMMQDEVNQSIIISGESGAGKTETAKAAVQYLAALGGGSGIDDRIPQANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTFLLEKSRVVQLVNGERSFHVFYQLCAGASSTLKEKLNIRVASEYSYLNHSECLVIGGVDDARKFHILVEALDTLQFTKEDQEHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSPNELKLVLSTHKVQSGNGSIAKKLTLRQATDARDALAKFIYASLFDWLVEQINKSLKPRTEHSGRSINILDFYGFESFKACSSLILFIYKNGFEQFCINYANERLQQHFMRHLFKLQQEDYEFNGVDGTKVNFEDNQECLNLIEKKPLGVLALLDEELNFPKATDLTFANKLKQHFKSQPCFKGERGRAFGIRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLLASKLINHSQKPTVSMCSTEVVESPEPGVGTKYKLLLFDLFHKLEYTSHHFICCIRPNRNQVGGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMMHHEFAGRYGFLLKETGASRDPLSISIAVLQQFNVHPEMYHVGYTKLFFRTGQIRALDERRKQVMQGILGVQKYFRGCHSRGNFHDLKQGATTLQSFIRGENARRRCTVKVKRFSFVVYAFSVPKKAYELQGIIRLQSVIRGSLARKHFRSMRDSKRDFPENKKSKLTTGGRVSEEEFQERVQSLPTTLTELQKRVLEAEATIEKKEGENAAMREQVKQFESRRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLAAENVTCPPGRIDAGNSPPHYYDSEDTTSMGSRTPGGTTPIKASGISEVGAGREMNGTLVAVNNLVKEFEQRRTAFDDDAKALIEAKSGQAQTGSNLNPDEEYRKIKVRFEAWKKEYKARLRETKAKVHHKHGHFEVDKLRRKWWGKFSKAS 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31704159 31715312 + ClCG11G018470.1 Cla11g01804 285626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01804 1269 PANTHER MYOSIN-2 ISOFORM X1 170 1266 - -
Cla11g01804 1269 Gene3D Myosin VI head, motor domain, U50 subdomain 485 791 - -
Cla11g01804 1269 PRINTS Myosin heavy chain signature 272 291 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 PRINTS Myosin heavy chain signature 368 395 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 PRINTS Myosin heavy chain signature 326 351 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 PRINTS Myosin heavy chain signature 610 638 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 PRINTS Myosin heavy chain signature 663 691 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 Gene3D - 856 924 - -
Cla11g01804 1269 Gene3D - 929 974 - -
Cla11g01804 1269 MobiDBLite consensus disorder prediction 1012 1039 - -
Cla11g01804 1269 Pfam IQ calmodulin-binding motif 951 968 IPR000048 GO:0005515
Cla11g01804 1269 Pfam IQ calmodulin-binding motif 993 1011 IPR000048 GO:0005515
Cla11g01804 1269 Pfam Myosin head (motor domain) 244 911 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 ProSiteProfiles IQ motif profile. 990 1019 IPR000048 GO:0005515
Cla11g01804 1269 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 189 238 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 PANTHER MYOSIN 170 1266 - -
Cla11g01804 1269 Coils Coil 1050 1098 - -
Cla11g01804 1269 SMART MYSc_2a 236 924 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 ProSiteProfiles IQ motif profile. 948 976 IPR000048 GO:0005515
Cla11g01804 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 972 IPR027417 -
Cla11g01804 1269 MobiDBLite consensus disorder prediction 76 96 - -
Cla11g01804 1269 Gene3D Kinesin motor domain 245 852 IPR036961 -
Cla11g01804 1269 ProSiteProfiles Myosin motor domain profile. 242 923 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla11g01804 1269 Gene3D - 424 483 - -
Cla11g01804 1269 Gene3D - 610 813 - -
Cla11g01804 1269 CDD MYSc_Myo8 256 911 IPR036022 -
Cla11g01804 1269 SMART iq_5 989 1011 IPR000048 GO:0005515
Cla11g01804 1269 SMART iq_5 924 946 IPR000048 GO:0005515
Cla11g01804 1269 SMART iq_5 947 969 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01395 Cla-Chr2:28425973 Cla11g01804 Cla-Chr11:31704159 0 dispersed
Cla09g00751 Cla-Chr9:7447918 Cla11g01804 Cla-Chr11:31704159 3.03E-127 dispersed
Cla11g01804 Cla-Chr11:31704159 Cla05g00393 Cla-Chr5:3553666 9.64E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01804 K10357 - csv:101210624 2144.78