Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01805 ATGGGGGATTTATCTCGGGAGGAGATGAAAAATACACTTCGAATACTTGTCGCAACAGATTGCCATCTGGGCTATTTGGAGAAGGATGAAATACGGCGACATGATTCATTCAAGGCATTTGAAGAGATATGCTCAATTGCAGAACAAAAGCAGGTGGATTTTCTACTTCTTGGCGGTGACCTTTTCCATGAGAACAAGCCATCCCGATCAACATTAGTGAAGGCAATTGAGATCCTGCGTCGTCATTGCCTTAATGATAAACCAGTGCATTTCCAAGTTGTTAGCGACCAAACCATGAATTTTCCAAACACATTTGGTCACGTCAACTATGAAGATCCTCATTTTAATGTTGGCTTGCCAGTATTCAGTATTCATGGAAACCATGATGATCCTGCTGGAGTGGACAACCTTTCTGCTGTTGATATTCTCTCTGCATGCAATCTTGTGAACTACTTCGGGAAAATGGTTCTTGGTGGTTCTGGTGTTGGTCAGATCACCCTCTGCCCAATTCTTATCAGAAAGGGTTCAACATCCGTGGCTTTATATGGTCTTGGAAATATTAGAGATGAAAGGCTGAACAGGATGTTCCAGACACCACATGCTGTTCAGTGGATGCGGCCTGAAGCGCAGGAGGGCTGTCAAGTGACAGACTGGTTCAACATTCTGGTACTTCATCAAAACAGAGTAAAGTCAAATCCTAAGAATGCAATAAATGAGCATTTTTTACCTCGCTTCCTGGACTTCATTGTTTGGGGACATGAACACGAATGTTTGGTTGACCCTCTGGAAGTTCCTGGGATGGGGTTTCACATCACACAACCAGGTTCCTCAGTCGCAACATCACTGATTGATGGTGAATCAAAGCCAAAACATGTCCTTTTGCTGGAAATTAAGGGTAATCAATATCGGCCAACCAAGATACCTTTGACATCTGTAAGGCCATTTGAGTACACAGAGATTGTATTGAAGGATGAGCCTGACATTGACTCTAATGATCAGAACTCAATCATCGAACACTTGGACAAAGTGGTTCAAAATTTGATTGAGAAATCTAGCAAAAGGGTTGTAAACAGATCAGAGCTCAAGCTTCCATTAGTCCGCATAAAGGTGGATTACTCTGGATTTATGACAATAAATCCTCAAAGATTTGGTCAGAAATATGTTGGGAAGGTAGCAAATCCGCAAGACATCCTTATATTCTCAAAAGCTTCAAGGAAAGGTCGTAATGAAGTGAAAATTGATGATTCTGAAAGGCTTCGTCCAGAAGAACTGAATCAACAAAATATAGAGGCTTTAGTTGCAGAAAATAATCTGAAAATGGAGATCCTTCCTGTCAATGATTTGGATGTTGCGCTGCACAATTTTGTAAATAAAGATGACAAAATGGCATTTTATTCCTGCGTGCAATACAATCTAGAAGAAACACGAGACCGAGTCAAGGAGAGGAACACCCGTTCCAAGAATGATACAACATTCACATCATCTGTTCAGTCATCAAAAGATTTCGGTAGTAAAAGTTCCACGGCAGCTGGGTCTGCTGTTTCTTTCAGTGATGATGAGGATACAGTAAAAGTATCTGGGTCAAAATCCACTAGAGGTCGGAAAGTATCATCTAGGGCAGCTGATGACACTTCAATTAAAACTTCCACGCGAGGAAGGGGAAGGGGTAGAGGGAGGGGCACCAATAGTAGCCTTAAGCAGACAACTCTTGACGCAGCTCTTGGATTTCGCCAATCACAGAGATCTGCGACTGCTGCTGTTCGAAGCATAGCCGACACTGATGCTATGAATTCTGCTTCTAGTGGAGAACCAAGGGAAAATGAAGTTGAAGAAATTAACGACAGTTCGGAAAATGACGAAAGTCTTCTCAGCAAAGGAAGAAAGCGCACTGCTCCAAGGGGTAGAGGGAGAGGATCCACTCAGTCTAAACGGGGAAGGAAATCAGACAACTCTGCAGTTCAGAGAACGTTCATGGGTAGAAATGATGCTGATGATGACAGCGAAGATGAAGACAACGCGAGAAAGCTATTAAATAAGTCTCAGCCTCGGCGACCTCAATCTCGACTCGAGTTGGAGAACATGGTTCCTGTCCTGTCAATTGATCCTCTGTACAAATCCAAGATCGAAAATCCCTCTTTGAATCACGCATGCTCCGAAAATGCTTTCGAGCCAATGAACCACGTA 2184 42.81 MGDLSREEMKNTLRILVATDCHLGYLEKDEIRRHDSFKAFEEICSIAEQKQVDFLLLGGDLFHENKPSRSTLVKAIEILRRHCLNDKPVHFQVVSDQTMNFPNTFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGQITLCPILIRKGSTSVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEGCQVTDWFNILVLHQNRVKSNPKNAINEHFLPRFLDFIVWGHEHECLVDPLEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDEPDIDSNDQNSIIEHLDKVVQNLIEKSSKRVVNRSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASRKGRNEVKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNLEETRDRVKERNTRSKNDTTFTSSVQSSKDFGSKSSTAAGSAVSFSDDEDTVKVSGSKSTRGRKVSSRAADDTSIKTSTRGRGRGRGRGTNSSLKQTTLDAALGFRQSQRSATAAVRSIADTDAMNSASSGEPRENEVEEINDSSENDESLLSKGRKRTAPRGRGRGSTQSKRGRKSDNSAVQRTFMGRNDADDDSEDEDNARKLLNKSQPRRPQSRLELENMVPVLSIDPLYKSKIENPSLNHACSENAFEPMNHV 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31713290 31725797 - ClCG11G018480.1 Cla11g01805 285627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01805 728 MobiDBLite consensus disorder prediction 592 690 - -
Cla11g01805 728 TIGRFAM mre11: DNA repair protein (mre11) 11 402 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Cla11g01805 728 Gene3D - 9 313 IPR029052 -
Cla11g01805 728 SUPERFAMILY Metallo-dependent phosphatases 13 352 IPR029052 -
Cla11g01805 728 MobiDBLite consensus disorder prediction 477 567 - -
Cla11g01805 728 SMART Mre11_DNA_bind_2 302 455 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Cla11g01805 728 MobiDBLite consensus disorder prediction 535 550 - -
Cla11g01805 728 PIRSF DSB_repair_MRE11 1 682 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Cla11g01805 728 CDD MPP_Mre11_N 14 282 IPR041796 -
Cla11g01805 728 Pfam Mre11 DNA-binding presumed domain 303 455 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Cla11g01805 728 MobiDBLite consensus disorder prediction 488 521 - -
Cla11g01805 728 Pfam Calcineurin-like phosphoesterase 13 257 IPR004843 GO:0016787
Cla11g01805 728 Gene3D Mre11, capping domain 314 412 IPR038487 -
Cla11g01805 728 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 8 665 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01805 K10865 MRE11; double-strand break repair protein MRE11 - csv:101217141 1264.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g300 . . . . . . . . . . . . . . . Cpe06g00719 . . . . . . . . Cla11g01805 Cam11g1871 . Cco11g1901 Clacu11g2035 Cmu11g1840 Cre11g2246 . . Cone14ag1088 Cone15ag1100 Lsi04g01279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010909 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01805 Cla_Chr11 FPKM 9.379199 13.75949 55.057396 54.503521 8.883895 9.443384 8.769827 1.614527 0.898692 1.037841