Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01806 ATGACGGACATATTTGGCATGATTCTGGGAAGATCCGTTAGTGACCACAGAGAGAAGGATATGGACGTGGGGAAAGCAATCATCGGAGAGACGGACATGTTGCAGGCCATGCAACAAGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACCGACATTGCCTGTTTCATTAAAAAGGAATTTGACAGGATATACGGGGGAGGATGGCAATGCATAGTGGGCACTGATTTTGGATCATTTGTGACACATTGTTTTGGGTGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGCTCTGCTGCCTCAGAAGAAAAAGAACCTGAGCCAACTCAATTTTCTGTTATGGACACTCTAAAAGCTTGA 399 45.36 MTDIFGMILGRSVSDHREKDMDVGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQFSVMDTLKA 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31728863 31729760 - ClCG11G018540.2 Cla11g01806 285628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01806 132 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 14 110 IPR037177 GO:0007017|GO:0030286
Cla11g01806 132 PANTHER DYNEIN LIGHT CHAIN 21 117 - -
Cla11g01806 132 SUPERFAMILY DLC 20 110 IPR037177 GO:0007017|GO:0030286
Cla11g01806 132 Pfam Dynein light chain type 1 26 109 IPR001372 GO:0007017|GO:0030286
Cla11g01806 132 PANTHER DYNEIN LIGHT CHAIN 21 117 IPR001372 GO:0007017|GO:0030286
Cla11g01806 132 SMART Dynein_light_2 21 110 IPR001372 GO:0007017|GO:0030286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01806 K10418 DYNLL; dynein light chain LC8-type - csv:101210379 168.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00469 Cla-Chr6:5711885 Cla11g01806 Cla-Chr11:31728863 8.72E-21 dispersed
Cla06g00862 Cla-Chr6:12933276 Cla11g01806 Cla-Chr11:31728863 5.17E-30 dispersed
Cla11g01806 Cla-Chr11:31728863 Cla01g00625 Cla-Chr1:7221273 2.05E-17 dispersed
Cla11g01806 Cla-Chr11:31728863 Cla09g00182 Cla-Chr9:1852482 2.76E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g302 . . Bda07g00271 . . . . . . . . . . . . Cpe06g00720 . . . . . . . . Cla11g01806 Cam11g1872 Cec11g1895 Cco11g1903 Clacu11g2036 Cmu11g1841 . Cone6ag0111 . Cone14ag1090 . Lsi04g01278 . . . . . . . Bpe11g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012749 1 1 0 0 1 0 0 1 0 1 1 1 2 1 1 2 0 2 1 0 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01806 Cla_Chr11 FPKM 17.664234 20.538282 21.404703 20.034204 25.866817 25.201712 28.73456 18.129841 19.113499 18.546606