Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01808 ATGGCCGTTGCCGACCGTCACAAGCCACACGCCGATGTGAAGCTCTTCAGGTTGTGTCCGATTTGGCAATCAGGGAATACTAATTCGTCTTCTTCCTCGTCCACTCAGAACCTTCACCATAGTAGCCATGTCCCTAGCGACAGAAACTCAACGGCTTCGAATAAAATGAAATCTTCATCGTCTTCCAAGACGGTGTCCTCTGTGGCGAAGTCGCTGTTGCCTCCTCGGCGTAGGCTCCGGCTCGATCCTAACAATTCTTTGTTCTTTCCTTATGAACCCGGGAAGCAGGTAAAGAGCGCCATCAAGTTGAAGAATACGAGCAGATCCCATGTAGCTTTCAAGTTTCAAACTACAGCCCCGAAGAGCTGTTATATGCGCCCCCCTGGTGGCATTCTTGCTCCTGGAGAAAATTTTATTGCTACTGTCTTCAGATTTGTGGAGCACCCGGAGAATAATGAAAAGCCAATGGACCAGAAGAGCAAAATTAAGTTTAAGATCATGAGCCTTAAAGTGAAAGGAGGAACAGAATACGCACCCGAGCTGTTTGAAGAACAGAAGGACCAAGTAACAGTTGAGAGGATTTTGCGGGTCGTATTTGTTGATCCAGAGAGACCTAGTGCAGCTCTCGAAAAGCTGAAACGTCAATTGGCCGAAGCCGAGGCTGCACTTGAAGCACGCAAGAAACCTCCAGTAGAAACAGGTCCTCAGGTTGTAGGGGGTGAAGGTCTTGTTATAGATGAATGGAAAGAACGGAGGGAGAAATACCTTGCTCGTCAACAAGTCGGCGCAGTAGACTCTGTGTAA 804 48.01 MAVADRHKPHADVKLFRLCPIWQSGNTNSSSSSSTQNLHHSSHVPSDRNSTASNKMKSSSSSKTVSSVAKSLLPPRRRLRLDPNNSLFFPYEPGKQVKSAIKLKNTSRSHVAFKFQTTAPKSCYMRPPGGILAPGENFIATVFRFVEHPENNEKPMDQKSKIKFKIMSLKVKGGTEYAPELFEEQKDQVTVERILRVVFVDPERPSAALEKLKRQLAEAEAALEARKKPPVETGPQVVGGEGLVIDEWKERREKYLARQQVGAVDSV 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31742242 31745464 - ClCG11G018560.1 Cla11g01808 285630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01808 267 PANTHER VESICLE-ASSOCIATED PROTEIN 4-1 45 266 - -
Cla11g01808 267 MobiDBLite consensus disorder prediction 26 69 - -
Cla11g01808 267 Gene3D Immunoglobulins 75 204 IPR013783 -
Cla11g01808 267 Pfam MSP (Major sperm protein) domain 79 189 IPR000535 -
Cla11g01808 267 SUPERFAMILY PapD-like 67 209 IPR008962 -
Cla11g01808 267 Coils Coil 206 229 - -
Cla11g01808 267 ProSiteProfiles Major sperm protein (MSP) domain profile. 78 200 IPR000535 -
Cla11g01808 267 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 45 266 IPR016763 GO:0005789
Cla11g01808 267 MobiDBLite consensus disorder prediction 26 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01808 - - - csv:101216429 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01694 Cla-Chr2:31829803 Cla11g01808 Cla-Chr11:31742242 7.16E-88 dispersed
Cla10g00219 Cla-Chr10:2561885 Cla11g01808 Cla-Chr11:31742242 1.34E-08 dispersed
Cla11g01808 Cla-Chr11:31742242 Cla06g00291 Cla-Chr6:3745113 8.17E-09 dispersed
Cla11g01808 Cla-Chr11:31742242 Cla02g01595 Cla-Chr2:30649990 1.34E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g304 . . . . . . . . . . . . . . . Cpe06g00722 Cpe02g00727 . . . . . . . Cla11g01808 Cam11g1874 Cec11g1897 Cco11g1905 Clacu11g2038 Cmu11g1843 Cre11g2248 . . Cone14ag1092 Cone15ag1103 Lsi04g01276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000537 4 3 4 3 5 2 5 3 2 3 3 3 3 3 4 4 2 5 5 3 5 3 3 3 3 3 3 6 6 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01808 Cla_Chr11 FPKM 16.265409 19.01804 4.850318 4.741076 36.935642 35.239941 36.388935 7.032198 8.055324 8.303599