Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01809 ATGACCGACGCCATGGACTTGCTTCGATCTAATCTCTCCCGCGTTCGCATTCCGGAGCCTACCAATCGCATCTACAAGCAGGAATGCTGCTTGTCCTTCGACACTCCGAGGTCAGAAGGTGGTTTGTTCATTGATTTGAATACATTTCTAGCATTTGGAAAGGATTTTGTAGGTTGGAACTATGAGAGGACTGGAAATCCTGTGTATTTACACTTAAAGCAAAGAAAGAAGTTGGTTCCTGAAGACAGGCCTTCAAAGAAACCCACTCTCTTAGCTATAGGAGTTGATGGTGGGTTTGATAACAATGAACCCGAATATGATGAAACTTATAATATAGTGATACTGCCTAATTATGCAACTCTTCCATTTCCTTCGGTGGAGCTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCTGTCTTATTGGCTGAGGGCGCTGAGAGAAAAGAGCAACTTGCAGCATGGACAGCTGATAAGAAGCAGATTAGTTCATATGCAATGAATCTGCAGCAGATTGACAATGGTGTTATAGTTCCTCCTTCTGGATGGAAGTGTTCTAAATGTGATAAAACTGAGAATCTGTGGCTCAATTTAACTGACGGAATGATCCTTTGTGGGAGAAGAAATTGGGATGGAACAGGAGGTAACAACCATGCTGTTGAGCACTACAAAGAGACAGGCTATCCTCTTGCTGTTAAACTAGGAACGATCACAGCTGACCTTGAAGCAGCAGATGTTTACTCTTATCCAGAGGATGATAGTGTCTTGGACCCAATTCTAGGACAACATCTTGCTTTCTTTGGCATTGACTTTTCATCCTTACAGAAGACTGAAATGACCACTGCTGAAAGAGAGCTTGACCAAAACACTAATTTTGATTGGAATCGGATACAAGAAAGTGGACAGGAAGTTGAACCAGTTTTTGGGCCAGGTTACACTGGGCTTGTTAATCTAGGAAACAGCTGCTACTTGGCGGCGACAATGCAAGTTGTATTTTCAACGCATCTGTTTTGTGAAAGATACTATACGAAACAAAGTTTAAAATTGGCTTTTGAAACTGCACCTGCAGATCCAACTGTCGATCTTAACATGCAGCTAACAAAGCTGGCACATGGTTTGCTATCCGGAAAATATTCAATTCCTTCACCAGAGAAATTTGAAAAGTTGAATTCTTCTTCCTCGGCAATAAATGCAAAACAGGAAGGCATACCCCCTCGAATGTTCAAAGCGGTTATTGCCGCGAGCCATCCTGAATTTTCTACAATGAGACAGCAGAAGAGGTGGATATGCTCTGCAGAAGGGAAGAGTCAGAAGACTGATAATGATTTGCTAGGAACTCGTGTAAAGGTGACAAGGTGTGATGAGGCTTGCCGGTTGCCATGTGGGAATGCAATGACTACTTTGCAAGGGATAGTCCATTGTATCCACTTATACTGGATCCTGGAGACTCGGATGTTTAACTTTTCACGCTTTGACTGTCAAAGATGTTTTCTAAAACCACAGTCTGATGCCTTGGAATTCTTCCTGCATTTTCTTGATCAAGTTGAGCGACAGAATTCTGGGAGTTCTGGAAGTGATCCTGCAAGAAGCTTCAAATTTGGTATTGAGGATCGTATTTTGTGTTCCTCTGGAAAAGTTGCTTATAACAGACGGCATGATTATATTCTCTCATTGAACATCCCATTACATGAAGCTACTAATAAAGATGAAGTTGAAGCCTTCCAGAAGCTCAAGGCACAAAAGATCTCAGAAGGGAAGGAACTAGGCACTGATGAAATTGTCCGGCCTAGAGTACCTCTAGAGGCATGCCTTGCAAGTTTTTCATCTCCTGAGGAGATTCATGATTTTTACAGCACTGCGTTGCACACTAAGACTACAGCAACAAAGACAGCAAGATTAACTTCCTTCCCAGACTACCTGGTCTTGCATATGCGCAAATTTATTATGGGGGAGGGCTGGGTGCCCAAAAAACTAGATGTCTATATTGATGTCCCTGACATCATTGATCTTAGTCACTTGCGTAGTAAAGGACCTCAGGCTGGGGAAGAGCTTTTGCCCGAGGCTGGTCCTGAGGACGAGTTTCAGTCAAATAAACCTTCAGCCAATGATGATATTGTTGCTCAACTTGTGTCAATGGGATTTAACCATCTTCACTGCCAGAAAGCTGCCATTAACACCTCAAACACTGGAGTTGAAGAGGCTATGAATTGGTTACTTTCTCACATGGATGATCCAGATATAAATGATCCAATCTCCGACAAGGCAGATTTTGTTGTTGACCAAACAAAAGTTGACATGTTGCTTCAATTTGGTTTTCAAGAAGCCATTGCTAAGAAAGCACTAAAGGCATCTGGTGGTGACATTGAGAAAGCGACAGATTGGATATTTAACAATCCCGAAGCTTCTATGTCATCAGAACCAGACTGTTTGGACGCCACTACATCAAGCACACCAACTAACCTCGATGCTGGGCTGCCCGATGGTGGAGAGAGATACAGACTTATGGGAATAATAAGCCACATTGGAATGTCTACTCAATGCGGTCACTATGTTGCGCACATCTTTAAAGATGGTAGATGGGTTATTTTCAATGACGACAAAGTTGGTGTTTCAGTTAACCCACCCAAAGACATGGGATATTTGTATTTCTTTGAAAGGCTAAAAGAGTAG 2667 42.52 MTDAMDLLRSNLSRVRIPEPTNRIYKQECCLSFDTPRSEGGLFIDLNTFLAFGKDFVGWNYERTGNPVYLHLKQRKKLVPEDRPSKKPTLLAIGVDGGFDNNEPEYDETYNIVILPNYATLPFPSVELPEKVRLAVDAVLLAEGAERKEQLAAWTADKKQISSYAMNLQQIDNGVIVPPSGWKCSKCDKTENLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITADLEAADVYSYPEDDSVLDPILGQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPVFGPGYTGLVNLGNSCYLAATMQVVFSTHLFCERYYTKQSLKLAFETAPADPTVDLNMQLTKLAHGLLSGKYSIPSPEKFEKLNSSSSAINAKQEGIPPRMFKAVIAASHPEFSTMRQQKRWICSAEGKSQKTDNDLLGTRVKVTRCDEACRLPCGNAMTTLQGIVHCIHLYWILETRMFNFSRFDCQRCFLKPQSDALEFFLHFLDQVERQNSGSSGSDPARSFKFGIEDRILCSSGKVAYNRRHDYILSLNIPLHEATNKDEVEAFQKLKAQKISEGKELGTDEIVRPRVPLEACLASFSSPEEIHDFYSTALHTKTTATKTARLTSFPDYLVLHMRKFIMGEGWVPKKLDVYIDVPDIIDLSHLRSKGPQAGEELLPEAGPEDEFQSNKPSANDDIVAQLVSMGFNHLHCQKAAINTSNTGVEEAMNWLLSHMDDPDINDPISDKADFVVDQTKVDMLLQFGFQEAIAKKALKASGGDIEKATDWIFNNPEASMSSEPDCLDATTSSTPTNLDAGLPDGGERYRLMGIISHIGMSTQCGHYVAHIFKDGRWVIFNDDKVGVSVNPPKDMGYLYFFERLKE 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31749574 31763972 - ClCG11G018570.1 Cla11g01809 285631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01809 888 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 699 740 IPR015940 -
Cla11g01809 888 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 886 IPR028889 -
Cla11g01809 888 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Cla11g01809 888 SMART uba_6 759 796 IPR015940 -
Cla11g01809 888 SMART uba_6 701 739 IPR015940 -
Cla11g01809 888 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Cla11g01809 888 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Cla11g01809 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Cla11g01809 888 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 757 797 IPR015940 -
Cla11g01809 888 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 257 IPR001607 GO:0008270
Cla11g01809 888 Pfam Ubiquitin carboxyl-terminal hydrolase 476 883 IPR001394 GO:0004843|GO:0016579
Cla11g01809 888 SUPERFAMILY RING/U-box 162 270 - -
Cla11g01809 888 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 887 - -
Cla11g01809 888 SUPERFAMILY Cysteine proteinases 308 885 IPR038765 -
Cla11g01809 888 Gene3D Cysteine proteinases 460 887 - -
Cla11g01809 888 CDD UBA1_atUBP14 701 745 - -
Cla11g01809 888 Gene3D Cysteine proteinases 305 426 - -
Cla11g01809 888 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Cla11g01809 888 SUPERFAMILY UBA-like 675 750 IPR009060 GO:0005515
Cla11g01809 888 MobiDBLite consensus disorder prediction 677 696 - -
Cla11g01809 888 PIRSF UBP 497 887 IPR016652 GO:0004843|GO:0016579
Cla11g01809 888 PIRSF UBP 5 426 IPR016652 GO:0004843|GO:0016579
Cla11g01809 888 MobiDBLite consensus disorder prediction 802 822 - -
Cla11g01809 888 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 831 849 IPR018200 GO:0004843|GO:0006511
Cla11g01809 888 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 887 - -
Cla11g01809 888 Coils Coil 886 888 - -
Cla11g01809 888 Pfam Ubiquitin carboxyl-terminal hydrolase 312 424 IPR001394 GO:0004843|GO:0016579
Cla11g01809 888 Gene3D - 735 803 - -
Cla11g01809 888 Pfam UBA/TS-N domain 702 737 IPR015940 -
Cla11g01809 888 Pfam UBA/TS-N domain 759 794 IPR015940 -
Cla11g01809 888 CDD Peptidase_C19B 313 884 - -
Cla11g01809 888 Gene3D - 697 734 - -
Cla11g01809 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 106 IPR013083 -
Cla11g01809 888 MobiDBLite consensus disorder prediction 802 821 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01809 K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12] - csv:101210128 845.114
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01809 Cla-Chr11:31749574 Cla05g01666 Cla-Chr5:28320253 2.89E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g317 . . . . . . . . . . . . . . . . Cpe02g00728 . . . . . . . Cla11g01809 Cam11g1875 Cec11g1898 Cco11g1906 Clacu11g2039 Cmu11g1844 Cre11g2249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008963 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01809 Cla_Chr11 FPKM 4.486486 2.232365 5.225091 3.911463 11.77728 13.977909 8.345525 0.321658 0.158486 0.287202