Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01811 ATGAAGAGAAAAAGGGAAAAAAAAAAAAAACTTTTGGGACTAAATTTGATAATTTCCCAACTAAGAGGTAAGAAGACTTTGTCTCATAGCTTAAACCTTCTAAAGCGTTGGTTTATCACTTTATCTTCAGCCGTTCAACTTTCCGGCAGCCGCCACCATAGTTTCTCCTTTCTAAACTGCTTGTCGCTGTTCGAATCGCTCTCCAATGAGATTATGGTTACAAAGCTCTTCCTGAGGCCACAATCGCTTCCTCTCACAGCCTTTACCGCGAAATTCATCTTCCCCGGTAAGCATTTTCTCCCGATATGCTTCACCTCACCGTTTTCCTCCACCACAATCCACTCCCAATCTCAATTCTCCGACCAAAGTTTCCTCTATGGACCTTCTCTTTGCAAGGGCGTCCATCCAGTTCCATCGGTTTCCAGACAGTCTCCAGTCAATCATTCCCGACCTCTTCTCAAGACCCTAATCGGAAATCCGGAGAGGGAGCGTTTGCAAAACGAGGAAAGTGAAGAAGCTCTATTAGATGAAGATGCCTTCACTCGGATTTTCGACATTGCTGCACTTCGAGTTCCTTCCAGAGGCTGTTTCGAGCTTGAGAATCGGTTGCGTGGGCATCTCTTGAATTGGCCGCGGATTCGCAACATTGCTAGAGTTCCCGGCGATGAGGTCGAGGCCGAATTGGTGGAGTTTGTGGGAGAGCAGAATTGGAGCAATTCCGATGATGGAGATGGAATTGGTATTGATTCGTTGCATCGGAGAATTTATGGGAAAGCTGAGGGCGATGGGGAGCCTCTGAGTCCCGTATTGTACAGGGAAAAGCTAGTGAAAACGTTTGATTCAAAAGGATACGTGAACTTCAGACATTTGGCGAAAATGTCAAGGCCGAAGAAAAGGAAGGAGAAGAAGGAAGAAGGGAGAGATGAAGGGACGAGAAGAATGGGGAAAAGTAAAGTTGCCGCCGTGGAAGTTGTGGAGAGTGAGGAACTGGAAGTGGATGATATGAAGGGATTGTTGGGAGATGAGTTTAAGGGTGGAAAATGGAGGGGTTCGACTAGATTGTTGCTTTTGGATGAACGATACGCAGACAAAGGCATTGAAGAACTTCCAGAAGCGATTAAGGCTCTGCTGAAAGAAGATACCCAAGAAAAGATGAAACCGACAACTGAGCTAGTGAGGTGCAGGCTTACTTTATTTTATGATTATTGGCAGATGAATGAGGTTTTGGAGGCTTTGCTTCCAAAGGATATGATTATTCCTTCAGCCTTTGAAACTGTTGGACATATTGCACACTTAAACCTTAGAGATGAACATCTCCCATACAATAAGCTTATAGCCAAGGTTGTCTTGGATAAAAATAAGCCAAAGATACAAACAGTGGTGAATAAGATTGATGTCATCAACAATGATTACAGGACAATGCAACTTGAGGTTTTAGCTGGGAACCACTCCCTTGTGACCACAGTAGTTGAGAATGGTTTACGATTTCATTTGGACTTGGCAACAGTGTACTGGAATTCAAGGCTCGCAACTGAGAGACACAGGCTAATAAGTGGCTTTACCTGCAATGATGTTGTTTGTGATGTCTTTGCTGGAGTTGGTCCAATATCAATATCTGCCGCAAGAATAGTAAAGAAAGTATATGCCAATGACTTGAATCCCTATGCGGTTGAGTATCTGGAAAGAAATAGTGTTGCCAATAAACTCGAGAGGAAGATTGAGGTATTTAACATGGAAGGAAGGAGATTCATCAGCGCTATTTTTGCAAGTGAGAAAGCTCCCAAAATAACACAAGTTGTTATGAATTTGCCAAATGATGCTGCTGAATATCTAGATGCTTTCAAAGGAATACTAAGAGACCGGTCAGATATAGAATTTACATTGCCAATGATCCATGTTTACGGATTCTCTAAAACTCGAGATCCAGAATTCGACTTTCATGAGAGGATAAGAATTGCACTAACTGAGGTTGCAGTTGACGTGGATATGCGAAGGGTCCGACTTGTCGCACCAGGAAAATGGATGCTATGTGCTTCATTTAGACTTCCCAGAACTGTAGCTTTATCAAAGCCTACACTTAATAACATGTAA 2091 43.04 MKRKREKKKKLLGLNLIISQLRGKKTLSHSLNLLKRWFITLSSAVQLSGSRHHSFSFLNCLSLFESLSNEIMVTKLFLRPQSLPLTAFTAKFIFPGKHFLPICFTSPFSSTTIHSQSQFSDQSFLYGPSLCKGVHPVPSVSRQSPVNHSRPLLKTLIGNPERERLQNEESEEALLDEDAFTRIFDIAALRVPSRGCFELENRLRGHLLNWPRIRNIARVPGDEVEAELVEFVGEQNWSNSDDGDGIGIDSLHRRIYGKAEGDGEPLSPVLYREKLVKTFDSKGYVNFRHLAKMSRPKKRKEKKEEGRDEGTRRMGKSKVAAVEVVESEELEVDDMKGLLGDEFKGGKWRGSTRLLLLDERYADKGIEELPEAIKALLKEDTQEKMKPTTELVRCRLTLFYDYWQMNEVLEALLPKDMIIPSAFETVGHIAHLNLRDEHLPYNKLIAKVVLDKNKPKIQTVVNKIDVINNDYRTMQLEVLAGNHSLVTTVVENGLRFHLDLATVYWNSRLATERHRLISGFTCNDVVCDVFAGVGPISISAARIVKKVYANDLNPYAVEYLERNSVANKLERKIEVFNMEGRRFISAIFASEKAPKITQVVMNLPNDAAEYLDAFKGILRDRSDIEFTLPMIHVYGFSKTRDPEFDFHERIRIALTEVAVDVDMRRVRLVAPGKWMLCASFRLPRTVALSKPTLNNM 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31770123 31774924 + ClCG11G018590.2 Cla11g01811 285633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01811 696 MobiDBLite consensus disorder prediction 298 316 - -
Cla11g01811 696 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 423 684 IPR030382 -
Cla11g01811 696 MobiDBLite consensus disorder prediction 293 318 - -
Cla11g01811 696 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 172 684 IPR025792 GO:0009019|GO:0030488
Cla11g01811 696 Gene3D Vaccinia Virus protein VP39 486 682 IPR029063 -
Cla11g01811 696 Pfam Met-10+ like-protein 422 621 IPR030382 -
Cla11g01811 696 Gene3D - 404 482 - -
Cla11g01811 696 PANTHER TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE 2 106 694 - -
Cla11g01811 696 CDD AdoMet_MTases 526 577 - -
Cla11g01811 696 PANTHER TRNA METHYLTRANSFERASE 106 694 - -
Cla11g01811 696 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 419 684 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01811 K15429 TRM5, TRMT5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] - csv:101209881 1068.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00240 Cla-Chr11:2772127 Cla11g01811 Cla-Chr11:31770123 3.09E-10 dispersed
Cla11g01811 Cla-Chr11:31770123 Cla01g02146 Cla-Chr1:35628149 2.71E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g321 . . . . . . . . . . . . . . . Cpe06g00725 . . . . . . . . Cla11g01811 Cam11g1877 Cec11g1900 Cco11g1908 Clacu11g2041 Cmu11g1846 Cre11g2251 Cone6ag0106 Cone9ag0126 . . Lsi04g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010172 2 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01811 Cla_Chr11 FPKM 17.558447 18.499453 15.936489 15.129302 23.632305 21.743601 23.75897 15.000519 14.848366 15.482307