Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01820 ATGGATAAGAAGGAGAAAAATTCCCTCACGGTGGCTCCTTTTGAGTGTGCTTGGCTCAAGGACTTAAGATTTCGGGAAGCAGGACGGGGTTGTGTGGCTTTTGAAGCTTCTGCTCATAATGATATCACGTTGGTGTTCCGAGAGAATGTGGGGAGTCAACATTACCATTACAAACGAGATATCAGTCCTCATTATACGGTCATAATAGGTAGTCACCGAAATCGACGTCTAAGGATTATAGCCGATGGGAGAACTGTTGTAGATGTAGAGGGTGTTGCTCTTTGCAGTTCCTCGGCGTTTCAGAGCTATTGGATCAGTGTCTATGATGGTTTGATTAGCATTGGGAAGGGGAGATACCCATTTCAGAATCTGGTCTTTCAATGGCTTGATACAAATCCAAACTGCAGCGTTCGATATATTGGGCTTAGTAGCTGGGATAAACATGTGGGATATAGAAATGTTAACGTTTTGCCGCTGACGCAGGACCACATTTCCTTGTGGAAGCATGTGGATAATGGTGATGAAGGCGAGGAAGATGTAGAATTGGAGTTAGAAGATGAATACACAGATTATAAGAACTGGGGCCTTGAACATTTTCTAGAAAATTGGGATTTATCGGATGTACTTTTCTGTGTAGATTCTGGAGAAACACTTGTACCTGCTCACAAGGCTATCTTATTTGCTTCGGGAAACTTTCCCTTCAATTTGTCGCAAGATGTTGTGCAGCTACATGGAGTATCATATCCAGTTCTCCATGCTCTTCTTCGATATATTTACACAGGTCAAACTGAGATTCTAGAGTCCCAACTTGGTTCGTTGAGGGATTTAGCCTTACAACTTGAAGTGACGGCATTAGTGAACCAGTGTGATGACACGATGGAACAATTAAAACTGAACCAAAAGTTGTCGGACTCGGGCAAGAGGGTGGAATTATCATATCCAAGGATTCAGCCCCATTGTACTGCAGTATTCCCCTCCGGGCTTCCACTAAACGTGCAGAGGCTCAAACAATTACAACGTACTGGCGAGTTCAGTGATGTATGCATCTATATACAAGGTCATGGGTTTGTTGCCCATGTGCACAAAATCATTCTTAGCTTATGGAGCATGCCATTTGAAAGGATGTTTACCAATGGAATGAGTGAAACAGCGTCCTCTGAGGTTTATATTAGGGATGTATCACCAGAAGCTTTTCAAACCATGCTCAAGTTCATGTATAGTGGAGAATTGAGTAAAGATGTTACAATGGAATCTGATGTCTTGTTACTTCAACTACTATTTTTAGCTGATCAATTTGGTGTCTCTCTTCTCCATCAAGAATGCTGCAAAATACTTCTAGAATGCCTTTCGGAGGATTCAGTATGTTCCATCCTTCAAGTTGTTTCATCAATTCCATGCTGTAAGCTCATTGAAGAAACTTGTCAGAGGAAGTTCTCAATGCACTTTGATTATTGTACGACTGCAAATATTGAATTTGTCATATTAGATGAGTCAACTTTCCGCAAAATCCTTCAGTGTCCTGATTTGACAGTGACGTCTGAGGAAAAAGTACTCAATGCAATCTTAATGTGGGGTTTAGAAGCAAGTGAATTGTGTGGGTGGATGGCAGTAGATGAGCTTATGACATTTTCAACCCCTGAAATCCTTTTTGGTGAGAGACTTCAATCAGTTCAGGATTTGCTCTTTCTCGTGCGATTTCCATTACTCCCATATGCCTTGTTGGAGAAGTTGGAGAACAGTAGCATTAGCAGGAAGATTTGTACCTTTAAGAATCTTGTGAAGGAGGCTATCGACTTTGTGAAACTTGAACCATCAAGGCTAGAGGACAAGAAGAAGAACAACGTGAGATTTCAACATAGACGGTCCAGTTATAAGGAGCTACTGTACATTTGTGATGGGGACAGCAATGGAGTTCTATTCTTTGCCGGTACGTCATATGGAGAGCATCAGTGGGTCAATCCCATTCTTTCAAAGAAAATTACTATTACGGCAAGCAGTCCACCTTCAAGATACACAGATCCAAAGGTTCTGGTCTCGAGAACTTACCAGGGAACTTCCTTTGCCGGCCTTCGCCTGGAAGATGGGAAAACTCATTCGTGGTGGATGGTTGATATTGGCGAAGATCATCAGCTGTTGTGCAATTACTACACATTGAGACAAGATGGGTCAAGAGCATTCATCAGATATTGGAATCTTCAGGGGTCATTCGATGGGAAAACTTGGACGAACTTGCGAGTACATGAGAACGATCAGACAGTATGTAAGCCTGGTCAGTTTTCATCATGGCCAGTTACTGGACCGAACGCTTTACTTCCATTTAGATTCTTCCGTGTTCTTCTCACAGCCCCAACAACTGATGCTTCAAATCCATGGAACTTGTGCATTTGCTTTCTGGAACTGTATGGCTACTTCCTCTAG 2418 42.27 MDKKEKNSLTVAPFECAWLKDLRFREAGRGCVAFEASAHNDITLVFRENVGSQHYHYKRDISPHYTVIIGSHRNRRLRIIADGRTVVDVEGVALCSSSAFQSYWISVYDGLISIGKGRYPFQNLVFQWLDTNPNCSVRYIGLSSWDKHVGYRNVNVLPLTQDHISLWKHVDNGDEGEEDVELELEDEYTDYKNWGLEHFLENWDLSDVLFCVDSGETLVPAHKAILFASGNFPFNLSQDVVQLHGVSYPVLHALLRYIYTGQTEILESQLGSLRDLALQLEVTALVNQCDDTMEQLKLNQKLSDSGKRVELSYPRIQPHCTAVFPSGLPLNVQRLKQLQRTGEFSDVCIYIQGHGFVAHVHKIILSLWSMPFERMFTNGMSETASSEVYIRDVSPEAFQTMLKFMYSGELSKDVTMESDVLLLQLLFLADQFGVSLLHQECCKILLECLSEDSVCSILQVVSSIPCCKLIEETCQRKFSMHFDYCTTANIEFVILDESTFRKILQCPDLTVTSEEKVLNAILMWGLEASELCGWMAVDELMTFSTPEILFGERLQSVQDLLFLVRFPLLPYALLEKLENSSISRKICTFKNLVKEAIDFVKLEPSRLEDKKKNNVRFQHRRSSYKELLYICDGDSNGVLFFAGTSYGEHQWVNPILSKKITITASSPPSRYTDPKVLVSRTYQGTSFAGLRLEDGKTHSWWMVDIGEDHQLLCNYYTLRQDGSRAFIRYWNLQGSFDGKTWTNLRVHENDQTVCKPGQFSSWPVTGPNALLPFRFFRVLLTAPTTDASNPWNLCICFLELYGYFL 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31847561 31853607 - ClCG11G018700.2 Cla11g01820 285642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01820 805 Gene3D - 656 803 - -
Cla11g01820 805 ProSiteProfiles BTB domain profile. 345 414 IPR000210 GO:0005515
Cla11g01820 805 ProSiteProfiles BTB domain profile. 206 267 IPR000210 GO:0005515
Cla11g01820 805 Gene3D Potassium Channel Kv1.1; Chain A 194 313 IPR011333 -
Cla11g01820 805 SMART BACK_2 455 578 IPR011705 -
Cla11g01820 805 Gene3D Potassium Channel Kv1.1; Chain A 319 480 IPR011333 -
Cla11g01820 805 Pfam BTB And C-terminal Kelch 461 525 IPR011705 -
Cla11g01820 805 SMART BTB_4 345 449 IPR000210 GO:0005515
Cla11g01820 805 SMART BTB_4 206 297 IPR000210 GO:0005515
Cla11g01820 805 CDD BTB_POZ_ZBTB_KLHL-like 344 420 - -
Cla11g01820 805 SUPERFAMILY Galactose-binding domain-like 648 804 IPR008979 -
Cla11g01820 805 Pfam Farnesoic acid 0-methyl transferase 52 149 IPR022041 -
Cla11g01820 805 Pfam BTB/POZ domain 197 295 IPR000210 GO:0005515
Cla11g01820 805 Pfam BTB/POZ domain 335 447 IPR000210 GO:0005515
Cla11g01820 805 Gene3D - 481 600 - -
Cla11g01820 805 SUPERFAMILY POZ domain 332 446 IPR011333 -
Cla11g01820 805 SUPERFAMILY POZ domain 195 293 IPR011333 -
Cla11g01820 805 Pfam F5/8 type C domain 662 794 IPR000421 -
Cla11g01820 805 PANTHER OS05G0345500 PROTEIN 2 804 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01820 - - - csv:101222966 1536.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01820 Cla-Chr11:31847561 Cla06g00308 Cla-Chr6:3947662 8.26E-07 dispersed
Cla11g01820 Cla-Chr11:31847561 Cla05g00115 Cla-Chr5:1121546 1.74E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01820 Cla_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0