Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01821 ATGGAGAATTTGGAATTTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCGGAGAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCAACTGATGGAAGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCACTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTAGAAGGTTGGTTTTTGCGATTCACGATCTGGGTATTGCGCTTCTTGACGGATTCTTCTCTCATTCTTTTGAAGTGAAGGAAATGGCTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTTCATGGGAGTATACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCATCCCTGTGCAGTACTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAACAATAAAATCCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGTGCCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATCGTAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATTGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAAGCCTACACCCGAAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTGTGTCTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGGGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAGTGAGCCAGCAAGCTTTCTGTTGGAAGAAAAAATATGA 1713 45.07 MENLEFGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGRREAAAYGGERTGREIAPATDGSFSKLSLSRLFSGSTGWHSLATVTCLIKSLKGTLRVLDFRRLVFAIHDLGIALLDGFFSHSFEVKEMARSDENNPGVIGRANLHGSIRIGGGGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLTETDVVVNNKIPPIPIHRPITRKFAAQLANKQQPPVPEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVGFHQKAGTGKLTGVHRKYCTSKFGYAARSEPASFLLEEKI 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31856446 31859692 - ClCG11G018710.2 Cla11g01821 285643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01821 570 SUPERFAMILY Cyclin-like 307 442 IPR036915 -
Cla11g01821 570 PANTHER CYCLINS 157 563 IPR039361 -
Cla11g01821 570 SMART cyclin_7 449 531 IPR013763 -
Cla11g01821 570 SMART cyclin_7 352 436 IPR013763 -
Cla11g01821 570 Pfam Cyclin, N-terminal domain 317 443 IPR006671 -
Cla11g01821 570 Gene3D - 331 443 - -
Cla11g01821 570 PANTHER CYCLIN-B2-3-RELATED 157 563 - -
Cla11g01821 570 MobiDBLite consensus disorder prediction 224 261 - -
Cla11g01821 570 CDD CYCLIN 346 434 IPR013763 -
Cla11g01821 570 Pfam Cyclin, C-terminal domain 445 559 IPR004367 -
Cla11g01821 570 CDD CYCLIN 443 530 IPR013763 -
Cla11g01821 570 MobiDBLite consensus disorder prediction 239 260 - -
Cla11g01821 570 SUPERFAMILY Cyclin-like 444 562 IPR036915 -
Cla11g01821 570 Gene3D - 317 556 - -
Cla11g01821 570 SMART Cyclin_C_2 445 562 IPR004367 -
Cla11g01821 570 ProSitePatterns Cyclins signature. 347 378 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02038 Cla-Chr1:34895889 Cla11g01821 Cla-Chr11:31856446 8.61E-45 dispersed
Cla04g00589 Cla-Chr4:19809750 Cla11g01821 Cla-Chr11:31856446 9.32E-82 dispersed
Cla09g00216 Cla-Chr9:2169330 Cla11g01821 Cla-Chr11:31856446 3.39E-54 dispersed
Cla09g02222 Cla-Chr9:39812850 Cla11g01821 Cla-Chr11:31856446 9.74E-55 dispersed
Cla02g02191 Cla-Chr2:37061403 Cla11g01821 Cla-Chr11:31856446 2.39E-70 transposed
Cla08g01465 Cla-Chr8:27569075 Cla11g01821 Cla-Chr11:31856446 4.18E-07 transposed
Cla01g02033 Cla-Chr1:34872095 Cla11g01821 Cla-Chr11:31856446 1.43E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01821 K21777 - csv:101223199 771.155