Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g01830 | ATGATGGAGTGGCAGAACCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTCGAGCAATTGAGCAACGCCGATGGAGTTAATGGCCTCTATGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTTGTCGAGATGCACAAGGCAATCACTGCCCAGCAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCGTCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTGCAGCTTCAAATTCTTGAGCAGATATTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAGCATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTATGAACATTTCGTTCCCAAGTCAGGCAACATGTACTCTCAGAGAACTGATTTCGGTACTGAAATACTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCATTCGGATCTGGTCATATCAGTCAGATGAATCCATTACAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTAGCGGATTACTCTCCTTACACTCCTTGTGAAGGATATCACTTGGCCGAGTGA | 819 | 44.2 | MMEWQNQQQQNQTEQLQMQMQVEQLSNADGVNGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQTYEHFVPKSGNMYSQRTDFGTEILSFDAQSNKGEPMFQSFGSGHISQMNPLQNHRNNLSNDKMNVADYSPYTPCEGYHLAE | 272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 31948250 | 31949956 | + | ClCG11G018800.1 | Cla11g01830 | 285652 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g01830 | 272 | MobiDBLite | consensus disorder prediction | 157 | 192 | - | - | |
| Cla11g01830 | 272 | Gene3D | - | 101 | 165 | - | - | |
| Cla11g01830 | 272 | MobiDBLite | consensus disorder prediction | 174 | 190 | - | - | |
| Cla11g01830 | 272 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 2 | 233 | IPR044559 | GO:0003700 | |
| Cla11g01830 | 272 | Pfam | Homeodomain | 99 | 159 | IPR001356 | GO:0003677 | |
| Cla11g01830 | 272 | ProSiteProfiles | 'Homeobox' domain profile. | 95 | 160 | IPR001356 | GO:0003677 | |
| Cla11g01830 | 272 | SMART | HOX_1 | 97 | 164 | IPR001356 | GO:0003677 | |
| Cla11g01830 | 272 | PANTHER | - | 2 | 233 | - | - | |
| Cla11g01830 | 272 | SUPERFAMILY | Homeodomain-like | 98 | 161 | IPR009057 | - | |
| Cla11g01830 | 272 | CDD | homeodomain | 99 | 161 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla06g01422 | Cla-Chr6:27792731 | Cla11g01830 | Cla-Chr11:31948250 | 3.32E-13 | dispersed | |
| Cla10g00031 | Cla-Chr10:409762 | Cla11g01830 | Cla-Chr11:31948250 | 1.72E-91 | dispersed | |
| Cla11g00606 | Cla-Chr11:6883719 | Cla11g01830 | Cla-Chr11:31948250 | 1.65E-11 | dispersed | |
| Cla11g01830 | Cla-Chr11:31948250 | Cla04g01050 | Cla-Chr4:25683936 | 5.15E-14 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 62094 | PF00046 | Homeodomain | 8.60E-18 | CL0123 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g01830 | - | - | bhj:120085747 | 504.982 |