Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01830 ATGATGGAGTGGCAGAACCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTCGAGCAATTGAGCAACGCCGATGGAGTTAATGGCCTCTATGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTTGTCGAGATGCACAAGGCAATCACTGCCCAGCAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCGTCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTGCAGCTTCAAATTCTTGAGCAGATATTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAGCATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTATGAACATTTCGTTCCCAAGTCAGGCAACATGTACTCTCAGAGAACTGATTTCGGTACTGAAATACTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCATTCGGATCTGGTCATATCAGTCAGATGAATCCATTACAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTAGCGGATTACTCTCCTTACACTCCTTGTGAAGGATATCACTTGGCCGAGTGA 819 44.2 MMEWQNQQQQNQTEQLQMQMQVEQLSNADGVNGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQTYEHFVPKSGNMYSQRTDFGTEILSFDAQSNKGEPMFQSFGSGHISQMNPLQNHRNNLSNDKMNVADYSPYTPCEGYHLAE 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31948250 31949956 + ClCG11G018800.1 Cla11g01830 285652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01830 272 MobiDBLite consensus disorder prediction 157 192 - -
Cla11g01830 272 Gene3D - 101 165 - -
Cla11g01830 272 MobiDBLite consensus disorder prediction 174 190 - -
Cla11g01830 272 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 233 IPR044559 GO:0003700
Cla11g01830 272 Pfam Homeodomain 99 159 IPR001356 GO:0003677
Cla11g01830 272 ProSiteProfiles 'Homeobox' domain profile. 95 160 IPR001356 GO:0003677
Cla11g01830 272 SMART HOX_1 97 164 IPR001356 GO:0003677
Cla11g01830 272 PANTHER - 2 233 - -
Cla11g01830 272 SUPERFAMILY Homeodomain-like 98 161 IPR009057 -
Cla11g01830 272 CDD homeodomain 99 161 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01830 - - - bhj:120085747 504.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01422 Cla-Chr6:27792731 Cla11g01830 Cla-Chr11:31948250 3.32E-13 dispersed
Cla10g00031 Cla-Chr10:409762 Cla11g01830 Cla-Chr11:31948250 1.72E-91 dispersed
Cla11g00606 Cla-Chr11:6883719 Cla11g01830 Cla-Chr11:31948250 1.65E-11 dispersed
Cla11g01830 Cla-Chr11:31948250 Cla04g01050 Cla-Chr4:25683936 5.15E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla04g01050 CCT,ECH 1 195 Wox Gene Family AT3G18010 57.2 3.1e-48 189.5
Cla06g01422 CCT,ECH 1 176 Wox Gene Family AT3G18010 53.6 6.4e-41 165.2
Cla11g01830 . 1 271 Wox Gene Family AT4G35550 50.9 2.2e-57 219.5
Cla08g01585 . 5 162 Wox Gene Family AT1G46480 65.1 2.6e-52 202.2
Cla04g01050 CCT,ECH 1 195 Wox Gene Family AT3G18010 57.2 3.1e-48 189.5
Cla06g01422 CCT,ECH 1 176 Wox Gene Family AT3G18010 53.6 6.4e-41 165.2
Cla08g01585 . 5 162 Wox Gene Family AT1G46480 65.1 2.6e-52 202.2
Cla11g01830 . 1 271 Wox Gene Family AT4G35550 50.9 2.2e-57 219.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62094 PF00046 Homeodomain 8.60E-18 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01830 Cla_Chr11 FPKM 10.395145 12.105849 11.20616 9.402603 14.228071 16.885376 13.630462 12.225171 12.724308 12.456677