Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01831 ATGAGATTTTGGAGGAAACAATTGAAAAGTTCTCCAGTTTACCGCCAAATTCAACTCTCAGGGAGTTCGAATATCCCCACCCGACAAATCCTGTGCAACACTGCGAAAATGGTTTATGCAAAAGGGGGGACGAACCCTAAATCCAAGGCTAATCCGACTTATCAGCTCACGAAGAATGTGTACCCGATTGGTGGCATCCAAGTGGAATTCCCATTCCGACCATACGGTTCGCAGCTCGCGTTCATGGGCAGAGTCATATCCACCCTTGATCGAGCCCAGCGAGAGGGCCGTTGCCACGCATTGCTGGAATCTCCGACTGGAACCGGGAAGTCGCTTTCACTTCTGTGCTCGAGCCTCGCTTGGCAGAAGAACTACAAGATAAAGAATCAGGAGGCTAATTCCTGTCACTCTAAGCCCGCTCCAGAGGCTGCCACAGATCCTCTCGGTTTTGGCGGTGGATTTATTCCTGAAGTGCAGCCGTCAAGCTTATATCGTGAGGATATATTTAGGGCGATAGCTTACGACGACATATATTTTCTTTGCGCTAACTCTTCTGAGGGATATTTTGGTCTAGTGTCTGTAGATACAGAGTCATCTCTTCCAGTGCCAAACAACAAAAGTCAGAAGAAAAAAACAGCCCCGACCATATACTATGCCTCGAGGACACATTCACAGATATCACAAGTGATCCGCGAATATAAGAAAACTACCTATCGAGTGCCAATGGCAGTGTTGAATCCCTTGGCTTCCTCTCCTGTCAGCGGTGGTTCAGCTGCAATGCATTTCTGGGTAGTCCTCTTTAGAAACGCAAACAAGGTTAAAGGTCATCCAACTCTTCAGAAAGGAGGATGTCATGAGGTTCATGACATTGAAGATTTGGTGAAAGTTGGAGAAGTTGTAAAAGGTTGTTCATATTATGCAGCTCGTTCTATGTCAGACGATGCACAGCTGGTGTTCTGTCCATATAGCTATATTATCAATCCAGTTATTCGAGGAGCAATGGATGTAGATATTAAGGGTGCGATTGTGATCCTTGATGAAGCCCACAATATAGAGGATATTGCTCGTCATGCTGGTAGTGTGGATGTTGAAGAGGATACTTTAAATAAATTGCGGATGGAGTTAGAGCAACTATGTCATGTTAATTCTTTGGTTTACCAGCCTCTGTATGAAATGACACAGGATCTCATAAGTTGGATTAACCAGAGGAAGACCACATTACAGAAGCACGAGTTTCAGCATTATGTCACCTGTTGGACTGGAAATCATGCTCAAAGGGAGCTCCAAGAAGCTAATATAACTCAACAATGCTTCCCCATTTTGCTTGAATGTGCAACGAAGGCTATTAAAGCAGCTTCAGATACGGAGTCTGATGATGCACATTTGAGTGGCCTGTCAGTGATAACGCTGGAAGGGTTATTCTCTTCACTCACATATTTCTTCTCAAGAAATGGTTGCCACATGTCTGATTACCAGCTTGCATTACAACGCTATGTTAAAAGAGATCCTGGAAAAGCTTTTGGTGGCTGGACGCTTACGTTAAGTTTGTGGTGCTTGAATCCAGCTGTTGTATTTAGAGACATTGGCGATCTTTCCTTATCAGTTATTTTGACATCTGGGACCCTATCACCTATGAATTCCTTCTCATCTGAACTAGGAGTTCAGTTTGGAACTTCACTGGAAGCTCCTCATGTAATTGACGTGGAAGCTCAGGTGTGGCCAGCTATTATATCAACTGGTCCAGGAAATTATCCGCTCAATGGAAGTTATAAAACGGCCGATGGATATGCATTCCAGGATGCTCTAGGAAAATCTTTGGAGGAGATATTTTTTATCGCTCCTGGTGGCTGTCTTGTGTTCTTCCCTAGTTACAAGCTGATGGAGAAACTCCAAAGCCGTTGGTCTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCCCTTTTTGTTGAGCCAAGAGGAGGAGCTCAAGACGATTTTGATTCCATTTTGAAAGGTTATTATGATACTATACGTCTTGGCGATAACTTTGCAGTCGGGAAGAAGAGGCGAGGTAAGAAGGTTAAACCCAATCACCCATACGTGGTTGGCTGTGAAAATCCCAAGGAAGGTGCAGCACTCCTTGCAGTTTTTCGAGGAAAGATAATAGTTGGTATTCCATTTCCAAATATAAATGATATTCAAGTTGCATTGAAAAAAAAGTTCAATGACACATATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAGGCCTTCCGAGCTTTAAATCAAGCTGCAGGTATTGCTTGTAGCTGTTCTCTCTCTCTTTTTTCCCTTCATTTTCTTGGTGCTTATGTGGAATGGCATCATGCAAATAACCTTGTTATATTTTGTAACATTTTTTTTTCTGTAGGACGTTGTATTCGACACAAGTTTGACTATGGTGCCATTGTGCTATTAGACGAGCGTTTCCGGGAAGAGAGGAACAGGATGTACATTTCAAAGTGGCTAAGAAAATCCATTAAACAATTTGATAACTTTGAACAGTCCATGGGGGAGCTGAAATCCTTTTTTAGCCATATTAAGGAGCGCATTAGCAACAATACAGAAAGTGGCCTGCCAAAATCTGAGAATGAGGAGCACATTACTTCTACCTGTCCAAGTACTTGTAGAAGAAAGAAGATAGAGAAATTTGACGAGTTAAATTATCGTGGGCAGAAAGCTCATGAAGATGCAAATAACTGTATAATTGATCTGGAGTGCAGTGTTGAAACAGAAACGAGGAACCATGAGTTTCTATCTATGAATACCGTCCTCGAAGTTCCAGATTCACCAATTGTGCAGGAGACTCCTTGTGTTGATACTGGAGGCACCACTAGTCCAGGAGACTCCAAAGATGAAAGAACGACTTCAACCGTAATTGAGGCCTATTCTGAGTTTCCTGATCAATTATCTTATCATTCATTACATTTGATCAAATCAACAAGATCTCCTCTTACATCTGAATCTTCAGTTCTACATACTCCTGAAAGAAAGGTTGCTGCAAATGCATACAGCTTTGCACGAGATACAGAATCTTCTTTGAATATGAGTGTAAATTCTCATACCCAGAAAAGGAGGAAGTCTATCGGTTTAACTATTCCGAAACTTGCTCAAGAAGAGTTTGTTGATCCCAAAACCAAAAATCCTGAATGCAACAGTGTGGACAGAAGCTCAATAGTCAGCGGAAATTTGACTAGCCCAAAAGATACTAGTTATGAAGTTCTTCTCACAGAAAAGAAGTCTAAGAGTTCAAATGTCTCCCAAGTGCTTAAGCTAAATGACACTGTTCCTGTTTGTCTGTCTTCTGGCCTTCCAATGGACAAAAAGTTGCATCTGTCTTGTGCACTTTGTAGAAGCCCACTTGGTTGCCCAGAAAACCATTTAAACGTAACGTGCTCATTTACCGTATCATCAAAAACACACTTAATATCAAAATATAAGGAAATGTTTAAAGCTCAAACTGCCAATTCGCCGACAAGTATACAGCTTATTATTACAGACAGCTTGTTTGTTAACCAGAGGGTCCTAGTTAGGTCTTCCAAAGATTCAGGGCGTGGTATCTGGAGTGAAGAGGATGGTTGTGTATACAATTATGTCTTTTGCCCCTTCTGTTGCACTGACAATTGTATTGGTGTACAGATCATGGCGACTGATGCATCAAATATTCAGTTACTTAATAAAGTGATGTTTTACTTCGAGTGTTTGGAGATCCAAGACCTAAAAGCTGATACCAGAAAGGCTTCAGTAAACAAGGAATTATCACCCGTTAGTAGCTCAGCCGAGAATAGGTTTGCCGTCATGGAACCCATTGAAAATTTTTCATACTCCCCTAGCCCGCTAACCTCAGGCGGCTGGAGGTCTACTAAATTGAAAGTCAGAAGGAAAGGAACTTCATAG 3936 41.92 MRFWRKQLKSSPVYRQIQLSGSSNIPTRQILCNTAKMVYAKGGTNPKSKANPTYQLTKNVYPIGGIQVEFPFRPYGSQLAFMGRVISTLDRAQREGRCHALLESPTGTGKSLSLLCSSLAWQKNYKIKNQEANSCHSKPAPEAATDPLGFGGGFIPEVQPSSLYREDIFRAIAYDDIYFLCANSSEGYFGLVSVDTESSLPVPNNKSQKKKTAPTIYYASRTHSQISQVIREYKKTTYRVPMAVLNPLASSPVSGGSAAMHFWVVLFRNANKVKGHPTLQKGGCHEVHDIEDLVKVGEVVKGCSYYAARSMSDDAQLVFCPYSYIINPVIRGAMDVDIKGAIVILDEAHNIEDIARHAGSVDVEEDTLNKLRMELEQLCHVNSLVYQPLYEMTQDLISWINQRKTTLQKHEFQHYVTCWTGNHAQRELQEANITQQCFPILLECATKAIKAASDTESDDAHLSGLSVITLEGLFSSLTYFFSRNGCHMSDYQLALQRYVKRDPGKAFGGWTLTLSLWCLNPAVVFRDIGDLSLSVILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVEAQVWPAIISTGPGNYPLNGSYKTADGYAFQDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLQSRWSETGQWSRLNARKSLFVEPRGGAQDDFDSILKGYYDTIRLGDNFAVGKKRRGKKVKPNHPYVVGCENPKEGAALLAVFRGKIIVGIPFPNINDIQVALKKKFNDTYKMSKNLLSGNEWYCQQAFRALNQAAGIACSCSLSLFSLHFLGAYVEWHHANNLVIFCNIFFSVGRCIRHKFDYGAIVLLDERFREERNRMYISKWLRKSIKQFDNFEQSMGELKSFFSHIKERISNNTESGLPKSENEEHITSTCPSTCRRKKIEKFDELNYRGQKAHEDANNCIIDLECSVETETRNHEFLSMNTVLEVPDSPIVQETPCVDTGGTTSPGDSKDERTTSTVIEAYSEFPDQLSYHSLHLIKSTRSPLTSESSVLHTPERKVAANAYSFARDTESSLNMSVNSHTQKRRKSIGLTIPKLAQEEFVDPKTKNPECNSVDRSSIVSGNLTSPKDTSYEVLLTEKKSKSSNVSQVLKLNDTVPVCLSSGLPMDKKLHLSCALCRSPLGCPENHLNVTCSFTVSSKTHLISKYKEMFKAQTANSPTSIQLIITDSLFVNQRVLVRSSKDSGRGIWSEEDGCVYNYVFCPFCCTDNCIGVQIMATDASNIQLLNKVMFYFECLEIQDLKADTRKASVNKELSPVSSSAENRFAVMEPIENFSYSPSPLTSGGWRSTKLKVRRKGTS 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31950773 31960677 - ClCG11G018810.2 Cla11g01831 285653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01831 1311 Pfam Helicase C-terminal domain 802 838 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cla11g01831 1311 Pfam Helicase C-terminal domain 608 766 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cla11g01831 1311 SMART Cxpdneu3 624 825 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cla11g01831 1311 PANTHER FANCONI ANEMIA GROUP J PROTEIN 802 1176 - -
Cla11g01831 1311 PANTHER FANCONI ANEMIA GROUP J PROTEIN 55 766 - -
Cla11g01831 1311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 638 IPR027417 -
Cla11g01831 1311 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 55 766 IPR045028 -
Cla11g01831 1311 MobiDBLite consensus disorder prediction 946 967 - -
Cla11g01831 1311 SMART deadxpd 66 383 IPR006554 GO:0003678|GO:0016818
Cla11g01831 1311 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 802 1176 IPR045028 -
Cla11g01831 1311 Gene3D - 583 852 IPR027417 -
Cla11g01831 1311 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 64 396 IPR014013 GO:0005524
Cla11g01831 1311 Pfam DEAD_2 280 368 IPR010614 GO:0003677|GO:0003678|GO:0005524
Cla11g01831 1311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 353 IPR027417 -
Cla11g01831 1311 Gene3D - 73 407 IPR027417 -
Cla11g01831 1311 MobiDBLite consensus disorder prediction 950 967 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01831 K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein [EC:5.6.2.3] - csv:101217839 2093.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00197 Cla-Chr9:1947620 Cla11g01831 Cla-Chr11:31950773 4.63E-09 dispersed
Cla09g00639 Cla-Chr9:6041753 Cla11g01831 Cla-Chr11:31950773 2.95E-06 dispersed
Cla11g01831 Cla-Chr11:31950773 Cla09g00187 Cla-Chr9:1880437 5.05E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01831 Cla_Chr11 FPKM 87.656433 84.896301 16.199234 17.055325 12.187401 9.97933 13.054786 33.669727 34.232475 37.868885