Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01836 ATGATTTTAAAAGTTGAAAGTGGGAGAATTTTGAGAGTGGCTGTGGTGAAACCTAATCGTCGTCCACTGGAAGAGGCCGAGTCCGAGCCGCCCACTAGGGCGGAAGGGCCCACCTGTGGAGTATCGACGAGCGACTGTAGATGCTGTCACTGTTGCTGCACAAAGATTGGGCCTCCAAGTAAAGAACACTCCCCGACTTTTGCTTCATCAACCAATGAAGGAATTTTCTGCTTTTTGTTTTCGAAAAATTTTCACAATAATACTTACCTTCCGGGATCAGTTAGGTTTGTAACTGTTGCCGTGGCCTTGATATTGGGAGGTAGTAAGGAATCGGATTCTGGGTCTGCTTATAATGACAGCTTCATTGTTTGTGAATGTTTACTATTTAAGCATATCTTGGTTCTGAGTGTAATTGATTCACCAAGAGATAATAAAAAAACAGGTCATACCATCTCCTGGCCGGCGGCGGAAGAAAGGAAGAAACAGAAGAACATTTCATCAAGACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCGACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTCCCTCTGGTATCATTTTCGGCTACTGATCCTACTCTCTCTGCCCTTCAGTTTCCTTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAGATGACTGCAGTTGCTGAGATTGTTGAGTATTATAGTTGGAAAGAGGTCATTGCTATATATGTTGATGATGATTATGGGTGGAATGGAGTTGCGACATTGGGTGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTGGATTAGGCGCCTTAGTCTTTTCAGTGGCTAAGTACCTCCAAATGATAGGCAATGGATATGTATGGATAGCAACCGATTGGCTTTCGTCTCTATTAGACAGTGTTGTTCCTCTTCCTCTTGAGATCATGGAGTCGATGCAAGGAGTTCTTTCTCTACGACAGCACACAGCAGAATCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCATCACACACTCTAATGACTCCAAGCTGCATTTCAGTGAAAGTGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCCTGCTGAATAACATATTGGAGAGCGATTTTGTTGGTCTGACTGGTGCCATTAAGTTTGATTTGGACAGATCCCTTCTTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGTTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTTCCGAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTTCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACCGAAAATTTCCAGGGTTTCTGCATCGATGTGTTTACAGCTGCTGTAAACTTATTGCCGTATGCTGTCCCCCACCAATTTATAGCCTTTGGTGATGGCCATCACAATCCAAATTACACAGATCTTGTGTACGGGATTACAACCGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGGACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTGAGGTCCTTTATCTAAGATCTTCTAGCACAATTCGTCCTAATTACATATTTCAGTTTGTCACTTACACACTGAAGAAGAAAAGGAAGCTAATTGACATTAATTCAAAGATGTGCTGGAATACTTCAAATAGATTACTAGTGTCCCTACTCTTATCTCGAACTAGAAAACTAGGCCATGCCAATTGTTCAAATCCATACCCTTTCTCTCTCCCCCTCTTTCCTGTTGATATCTCGTTAAAATTGCCTGCTGATCCATTGACTACTTGTGAACTTTGCAGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAAAACACAATTAGCACTCTTGGCCGTCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCATTTGCTGAACGTTATCTGAGCGAGGAGCTGAACATATCTAGATCCAGGCTTGTTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTCCTCTCGAGACAATGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCACCATGGACAATGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTATTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATATTGCTTTCAGATTATTCGTCAGCTATACCGTGGCGATGCACAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAACCGCTTTCGAAGAATTATATCGATATTGGATGAGAAGAAAGAACCGTCTAAAAGGGGAAGCAAAAGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGACGATGATAATTTGGAGGCTGATCCTTGA 3423 42.62 MILKVESGRILRVAVVKPNRRPLEEAESEPPTRAEGPTCGVSTSDCRCCHCCCTKIGPPSKEHSPTFASSTNEGIFCFLFSKNFHNNTYLPGSVRFVTVAVALILGGSKESDSGSAYNDSFIVCECLLFKHILVLSVIDSPRDNKKTGHTISWPAAEERKKQKNISSRPSVVNIGAILSFNSTIGKVATIAIEEAVKDVNADPSILPGTDLWLQMQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYSWKEVIAIYVDDDYGWNGVATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPGLGALVFSVAKYLQMIGNGYVWIATDWLSSLLDSVVPLPLEIMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDLDRSLLHPAYDIINVIGTGSRRVGYWSNYSGLSIDVPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHQFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMLSGFWSIGRMMNSEAHLEDNVLQFYGEVLYLRSSSTIRPNYIFQFVTYTLKKKRKLIDINSKMCWNTSNRLLVSLLLSRTRKLGHANCSNPYPFSLPLFPVDISLKLPADPLTTCELCRFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLSEELNISRSRLVPLGSPEEYAKALELGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYRGDAQESDLSSSSGSHSNRFRRIISILDEKKEPSKRGSKRRKVEKSSENDKDDDNLEADP 1140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31994387 31999870 + ClCG11G018870.2 Cla11g01836 285658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01836 1140 CDD GluR_Plant 606 1031 - -
Cla11g01836 1140 MobiDBLite consensus disorder prediction 1105 1140 - -
Cla11g01836 1140 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 851 1139 - -
Cla11g01836 1140 Gene3D - 287 561 - -
Cla11g01836 1140 Pfam Ligand-gated ion channel 1033 1063 IPR001320 GO:0015276|GO:0016020
Cla11g01836 1140 SUPERFAMILY Periplasmic binding protein-like II 586 1033 - -
Cla11g01836 1140 SUPERFAMILY Periplasmic binding protein-like I 167 600 IPR028082 -
Cla11g01836 1140 Gene3D - 803 928 - -
Cla11g01836 1140 SMART GluR_14 609 1033 IPR001320 GO:0015276|GO:0016020
Cla11g01836 1140 Gene3D - 997 1030 - -
Cla11g01836 1140 CDD PBP1_GABAb_receptor_plant 173 562 IPR044440 -
Cla11g01836 1140 Pfam Receptor family ligand binding region 191 546 IPR001828 -
Cla11g01836 1140 Pfam Bacterial extracellular solute-binding proteins, family 3 626 1032 IPR001638 -
Cla11g01836 1140 Gene3D - 190 536 - -
Cla11g01836 1140 PANTHER GLUTAMATE RECEPTOR 3.3 851 1139 - -
Cla11g01836 1140 PANTHER GLUTAMATE RECEPTOR 3.3 159 736 - -
Cla11g01836 1140 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 159 736 - -
Cla11g01836 1140 Gene3D - 960 996 - -
Cla11g01836 1140 MobiDBLite consensus disorder prediction 1105 1132 - -
Cla11g01836 1140 Gene3D - 573 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00841 Cla-Chr2:11497814 Cla11g01836 Cla-Chr11:31994387 2.02E-92 dispersed
Cla02g00842 Cla-Chr2:11583480 Cla11g01836 Cla-Chr11:31994387 1.52E-62 dispersed
Cla11g01836 Cla-Chr11:31994387 Cla07g01293 Cla-Chr7:30042395 2.85E-36 dispersed
Cla01g02042 Cla-Chr1:34928727 Cla11g01836 Cla-Chr11:31994387 1.35E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01836 K05387 - csv:101204862 1097.03