Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01841 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTTGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGGGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCCGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCATCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCTTTCTTAATCAAATTCATGTAATTACTACTGAAAATTGTGGATGTATTCAAGTTCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATTTTGAAGTCGACAAACGCGCTACCATTGCGCCACGGATCCACTTTTGTTTATGAATTCACTAACAAAAACCTATGGACTGCAGCTGAATCCAACGCGAAGTTAGTCCAGCAAAACCCTATCCTCCCCCGGCTTCCTCATTTGCTGTGGCATGGCGTCTTTATGCATTTTCCCGTCTCCACCATTCTAATTCCTCTTTTATCTTCTTTCAGTATGTTTTCCTGCACCTGTAATGGCATCCAATTGGACTCTGCAATTACATTCTGTTTCTTTCCAGGTAATATCTCCTCCAGTCTTCTTCTTCTGATTTTATCAGGAAATGTCCTCTCCCATGTTTATCAAATTTTTAGATCATCCGTGCAGCCATACGTATGGGTTCGAAAGCCTCCTGCTCTGTCCGGCGTATCCCAACTTGGAATTGGTTATGAATGCGCTGGCATTGGGTATGGTCGTTTGAGCTGCATCTGGAATCGGCATCGAATTGGTCGCAAATTTCTAATAAAATCGGCTGAGGGTTCCGGGAGCACTGATTCCGGTCGAAATGTAGAAGATGATGAAATATTGGTCAAGAGTGGGACTGGTGGTGTGGCTTCCAAAGATTACATCGGGAAAATGCAGGAGATGATTATTTCGTCACCTGCTGGCGTTTTCTTGATGAACAAATGTACTGGGAACGGTCTTGCAATTGGGATTTGCATTGTTACTGCTTGTTTAGCAATAGTTGCAAGAGTGTATTTGATGGGGAAGTCCAGGAACAATCATTCCGGATCAGTGGCTGATCTAGTCAGGCGTGGTCAGCTAAGATCCGACAGAAGAGGCATTTCCAAACCTTTAAAATACAACGACCCTTTCAATAATCCACTGGTGAAGGTTGACAAAAGCAATTCGTCTGTACAAATGTGTGGAAAGGTTTATCGGTTGGCCCCAGTTACTCTTACCAAGGAGGAACAAAGTATTCATCAGAAACGGAGGTCTCGGGCATATCAGTGGAAGAGACCAACCATGTTTCTTAAGGAGGGAGATTCAATTCCTCCTGATGTTGACCCCGATACAATCAGGTGGATTCCTGCAAACCATCCTTTCGCAACAACAGCTAGTGATATTGATGAAGACTTGGCCCAGAACAATGTGTACCAAAAGCATGGTGTTCCTTTCCGTATTCAAGCTGAGCATGAGGCTTTGCAGAGAAAGCTTGAAGCACTCCAGAGTGAACAGAAGCTGAATAATTTATTTATAGATCCTGGAAGTGTGAAGGACTTTGAGAGGCCTTTTAAGTCGAAATCCAAGTCAGATGAACAAGTAGAACAAAGTTTTTCAGATCACCAAGCTGGAGAGTCAAAGCCTCCAAACTCGGGACATCTCCCAAGTTCTTTCGGGGATCAATCAGCATCTGATGAAGCACAGAAATCCTGA 2106 47.1 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSFLNQIHVITTENCGCIQVPRWHNFTVQAMNSKRGTVSASCGWWTLQLPILKSTNALPLRHGSTFVYEFTNKNLWTAAESNAKLVQQNPILPRLPHLLWHGVFMHFPVSTILIPLLSSFSMFSCTCNGIQLDSAITFCFFPGNISSSLLLLILSGNVLSHVYQIFRSSVQPYVWVRKPPALSGVSQLGIGYECAGIGYGRLSCIWNRHRIGRKFLIKSAEGSGSTDSGRNVEDDEILVKSGTGGVASKDYIGKMQEMIISSPAGVFLMNKCTGNGLAIGICIVTACLAIVARVYLMGKSRNNHSGSVADLVRRGQLRSDRRGISKPLKYNDPFNNPLVKVDKSNSSVQMCGKVYRLAPVTLTKEEQSIHQKRRSRAYQWKRPTMFLKEGDSIPPDVDPDTIRWIPANHPFATTASDIDEDLAQNNVYQKHGVPFRIQAEHEALQRKLEALQSEQKLNNLFIDPGSVKDFERPFKSKSKSDEQVEQSFSDHQAGESKPPNSGHLPSSFGDQSASDEAQKS 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32014194 32022557 + ClCG11G018920.2 Cla11g01841 285663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01841 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cla11g01841 701 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cla11g01841 701 SMART ring_2 103 144 IPR001841 -
Cla11g01841 701 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 385 699 IPR034572 GO:0009507|GO:0010020
Cla11g01841 701 CDD RING-H2_PA-TM-RING 102 145 - -
Cla11g01841 701 MobiDBLite consensus disorder prediction 652 701 - -
Cla11g01841 701 MobiDBLite consensus disorder prediction 652 669 - -
Cla11g01841 701 MobiDBLite consensus disorder prediction 670 701 - -
Cla11g01841 701 Pfam Ring finger domain 102 145 IPR001841 -
Cla11g01841 701 SUPERFAMILY RING/U-box 85 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01657 Cla-Chr6:30084390 Cla11g01841 Cla-Chr11:32014194 8.86E-12 dispersed
Cla10g00012 Cla-Chr10:234225 Cla11g01841 Cla-Chr11:32014194 1.28E-56 dispersed
Cla10g02144 Cla-Chr10:37080921 Cla11g01841 Cla-Chr11:32014194 6.87E-29 dispersed
Cla11g01841 Cla-Chr11:32014194 Cla09g00133 Cla-Chr9:1367600 1.93E-20 dispersed
Cla11g01841 Cla-Chr11:32014194 Cla11g00545 Cla-Chr11:6187381 1.49E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01841 - - bhj:120087009 652.899