Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01846 ATGGCTCTGTCTAAGTTACTATCTCTAGCCCTGTGCATGTCCCTTTTTGTCGTAGCAAGTTGTGGGAAGGACTTTTCCATTGTGGGTTACTCGCCAGAAGACTTGACTTCCATGGATAAACTAGTTGAGCTATTCGAAGAATGGATATCAAAGCATGGCAAGATTTATGAGACCATCGAAGAAAAGTGGCAAAGATTTGAGGTGTTTAAAGACAACTTGAAGCACATTGACGAAACAAACAAGAAAGTGAGTAGTTATTGGCTTGGACTTAATGAGTTTGCTGATTTGACCCACCAAGAGTTCAAAAAGATGTATCTTGGTCTAAAAGTTGAGTCGTCTCGAACAAGGCAATCCCCAGAAGAATTCACCTATAAGGATGTCGTAGATTTGCCCAAGTCAGTAGATTGGAGAAAGAAAGGCGCTGTCACTCGTGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGCAGCAGTTGAGGGGATAAATAAGATTGTTAATGGAAATTTGACTTCGCTATCAGAGCAGGAACTAATTGATTGCGATAGACCTTATAACAACGGGTGCCATGGGGGCCTCATGGATTACGCATTTTCTTTTATTGTGTCTAGTGGTGGACTTCACAAGGAAGAAGACTACCCTTATCTCGAGGAGGAAAGCACTTGCGATAACAAAAAGGGGGAATTGGAGGTAGTGACAATCTCGGGCTATAAGGACGTACCGGAGAACAATGAGGCCAGCCTCATAAAGGCATTGGCACACCAGCCACTTAGCGTGGCCATAGAAGCTTCAGGAAGAGATTTCCAATTCTACAGCGGGGGCGTTTTCGATGGACCCTGTGGAACCGAGCTTGATCATGGAGTAACAGCCGTTGGATACGGATCATCAAAGGGAGTGGACTACATCATTGTGAAGAACTCTTGGGGACCCAAATGGGGAGAGAAAGGATATATAAGAATGAAGAGGAACACTGGGAAGCCTGCAGGGCTCTGTGGAATCAATAAAATGGCTTCCTATCCTACTAAAAATAAGTGA 1047 44.22 MALSKLLSLALCMSLFVVASCGKDFSIVGYSPEDLTSMDKLVELFEEWISKHGKIYETIEEKWQRFEVFKDNLKHIDETNKKVSSYWLGLNEFADLTHQEFKKMYLGLKVESSRTRQSPEEFTYKDVVDLPKSVDWRKKGAVTRVKNQGSCGSCWAFSTVAAVEGINKIVNGNLTSLSEQELIDCDRPYNNGCHGGLMDYAFSFIVSSGGLHKEEDYPYLEEESTCDNKKGELEVVTISGYKDVPENNEASLIKALAHQPLSVAIEASGRDFQFYSGGVFDGPCGTELDHGVTAVGYGSSKGVDYIIVKNSWGPKWGEKGYIRMKRNTGKPAGLCGINKMASYPTKNK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32039763 32041304 + ClCG11G018990.1 Cla11g01846 285668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01846 348 PRINTS Papain cysteine protease (C1) family signature 290 300 IPR000668 GO:0006508|GO:0008234
Cla11g01846 348 PRINTS Papain cysteine protease (C1) family signature 305 311 IPR000668 GO:0006508|GO:0008234
Cla11g01846 348 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508|GO:0008234
Cla11g01846 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Cla11g01846 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Cla11g01846 348 Gene3D Cysteine proteinases 24 347 - -
Cla11g01846 348 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cla11g01846 348 PANTHER CYSTEINE PROTEASE XCP1-LIKE 22 346 - -
Cla11g01846 348 SMART Inhibitor_I29_2 45 101 IPR013201 -
Cla11g01846 348 SUPERFAMILY Cysteine proteinases 40 345 IPR038765 -
Cla11g01846 348 Pfam Cathepsin propeptide inhibitor domain (I29) 45 101 IPR013201 -
Cla11g01846 348 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508|GO:0008234
Cla11g01846 348 SMART pept_c1 130 345 IPR000668 GO:0006508|GO:0008234
Cla11g01846 348 CDD Peptidase_C1A 131 344 IPR039417 -
Cla11g01846 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Cla11g01846 348 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 22 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01846 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101205826 688.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01665 Cla-Chr1:31545388 Cla11g01846 Cla-Chr11:32039763 9.01E-119 dispersed
Cla02g00332 Cla-Chr2:3252199 Cla11g01846 Cla-Chr11:32039763 0 dispersed
Cla02g00887 Cla-Chr2:12595688 Cla11g01846 Cla-Chr11:32039763 1.25E-110 dispersed
Cla05g02070 Cla-Chr5:32386351 Cla11g01846 Cla-Chr11:32039763 8.89E-124 dispersed
Cla08g00337 Cla-Chr8:8052895 Cla11g01846 Cla-Chr11:32039763 1.81E-92 dispersed
Cla08g01454 Cla-Chr8:27436366 Cla11g01846 Cla-Chr11:32039763 1.86E-92 dispersed
Cla11g01846 Cla-Chr11:32039763 Cla02g00624 Cla-Chr2:6955198 1.29E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g53 . . . . . . . . . . . . Car01g01605 . . . . . . . . . . . . . . . . . . Cone4ag2036 . . . Lsi04g01835 Csa04g02733 . . . . . . . . . . . Cmo01g02094 . . . . . . Cpe02g00017 Bhi09g02835 Tan01g5151 Cmetu07g1435 . Hepe01g2364 Mch11g0035 . Cla11g01846 Cam11g1913 Cec11g1938 Cco11g1951 Clacu11g2077 Cmu11g1882 Cre11g2290 . . . Cme07g00030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01846 Cla_Chr11 FPKM 0.483498 0.247642 1.592169 1.028783 0.742579 0.799894 0.554194 6.539944 6.262867 6.780721