Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01851 ATGTCGGGATCTGAGACCGGAGTGATTTCCAGCGGCGAACCCTTCACCATCGGTCTCCACAAGAATTCAGTACAGTCACAACAGCCGGTCATGCAGGGCATGCATTTACCCTTCGGCGTCGATGGCGTCTACAAGCCCGTTGCCGCCGCCTCTCCCACCTACCAGTCCTCCGGCGTCGGAGTTGCCGGTAATGCTGGTGCCGATGGATCTGCTCGTGAAGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTCGGAAGTATGGGCCAGATGGCAGTATGGCAATGGCTCCTGCAGTCCGCTCTCCCGCCGCAACTCAGTCCAGTGGAGGTTTTTGTCCTCCACCCACCGCCGCGCCTCCGTCGGGAGGATCAGCCACTCAAACTTCTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTTCTAGCAAAAAGCAGCAGTTGGATGGCTCGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTACGAGGGGCGATTCGAGATTTTGTCGCTATCTGGGTCCTATCTCCTCTCTGAGAATGGCAGCCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGTCCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTACAGGTGGTCGTGGGGAGCTTCGTCACTGATGGGGTGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGTCCCCTGTTACTGCACCCCATAAACTTGCTCCAATCCGTGCTGGAATGACGGGAGCCAGCAGCCCGCCATCACGTGGGACTCTCAGTGAATCCTCAGGAGGGCCCGGGAGTCCGTTTAATCAGAGTGCTATAGCCTGCAATAATAACACCATATATGCACCTGTAATTTATGCTAAGCTAAAGGATATTGTAACTCTTTCCAGTTTGGGATGGCTTGGAACCTTGGCCTTGTGCCCGCTGGAAACGAAAGACAGACAGACGACACAGATGGTTTCAGTTAGGAATTAG 1179 52.5 MSGSETGVISSGEPFTIGLHKNSVQSQQPVMQGMHLPFGVDGVYKPVAAASPTYQSSGVGVAGNAGADGSAREAFVNMNSQSEPVKRKRGRPRKYGPDGSMAMAPAVRSPAATQSSGGFCPPPTAAPPSGGSATQTSLKKARGRPPGSSSKKQQLDGSGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGVHKELRQVNQIEQSPVTAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAIACNNNTIYAPVIYAKLKDIVTLSSLGWLGTLALCPLETKDRQTTQMVSVRN 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32052269 32055673 - ClCG11G019040.2 Cla11g01851 285673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01851 392 MobiDBLite consensus disorder prediction 77 165 - -
Cla11g01851 392 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 289 - -
Cla11g01851 392 MobiDBLite consensus disorder prediction 310 333 - -
Cla11g01851 392 MobiDBLite consensus disorder prediction 317 333 - -
Cla11g01851 392 CDD DUF296 166 280 IPR005175 -
Cla11g01851 392 Gene3D - 167 300 - -
Cla11g01851 392 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 346 IPR039605 GO:0003680
Cla11g01851 392 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Cla11g01851 392 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Cla11g01851 392 MobiDBLite consensus disorder prediction 129 160 - -
Cla11g01851 392 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 16 346 - -
Cla11g01851 392 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Cla11g01851 392 SMART AT_hook_2 86 98 IPR017956 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla08g00927 Cla11g01851 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00927 Cla-Chr8:21810985 Cla11g01851 Cla-Chr11:32052269 5.64E-125 dispersed
Cla09g01137 Cla-Chr9:12748962 Cla11g01851 Cla-Chr11:32052269 8.29E-53 dispersed
Cla10g00169 Cla-Chr10:1773411 Cla11g01851 Cla-Chr11:32052269 8.58E-47 dispersed
Cla11g00044 Cla-Chr11:568389 Cla11g01851 Cla-Chr11:32052269 4.92E-58 dispersed
Cla11g01851 Cla-Chr11:32052269 Cla01g00501 Cla-Chr1:5399596 2.85E-59 dispersed
Cla11g01851 Cla-Chr11:32052269 Cla06g00354 Cla-Chr6:4478870 4.77E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01851 - - csv:101207513 580.867