Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01861 ATGGCAATGGCGCTAGTTCAGCCACACACTTCAGCTTCTGCAATTTCGTCTTCCTCCGCCTCATTCTACAGAAGTTCTTTTCAGCAACTCCGTTCGCGGACCACGACCCTTGATCTTCGGAACAGCCACTCCATCCCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAAGCCATCGCCAATAGTCCACTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAAGCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGCTCATGGTATGGAGAAGGGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAAATGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCATCCCTTGGAGCTTTAGTTCCAGAAATCTTAGATATTTTTGGAGCTTTTCATTTTACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCTATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATTGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGACCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGAACACATTTCAGATCCTTTCCACAATAACTTTCTTTCCCTGCTCAATTCTTCATAA 1014 45.56 MAMALVQPHTSASAISSSSASFYRSSFQQLRSRTTTLDLRNSHSIPHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQLEKKKKAAVANSSKFKALAEEARKDSSWYGEGRPRWLGPLPYDYPKYLTGEMPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNSS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32115231 32125998 + ClCG11G019140.1 Cla11g01861 285683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01861 337 Gene3D Chlorophyll a/b binding protein domain 122 334 - -
Cla11g01861 337 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 48 330 IPR001344 GO:0009765|GO:0016020
Cla11g01861 337 SUPERFAMILY Chlorophyll a-b binding protein 114 334 - -
Cla11g01861 337 Pfam Chlorophyll A-B binding protein 132 307 IPR022796 -
Cla11g01861 337 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC 48 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01121 Cla-Chr10:25634840 Cla11g01861 Cla-Chr11:32115231 2.65E-59 dispersed
Cla11g01861 Cla-Chr11:32115231 Cla09g02009 Cla-Chr9:37651864 8.93E-34 dispersed
Cla11g01861 Cla-Chr11:32115231 Cla01g02379 Cla-Chr1:37491657 2.69E-60 transposed
Cla11g01861 Cla-Chr11:32115231 Cla02g01804 Cla-Chr2:33078485 1.30E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01861 K14172 - csv:101209460 617.076