Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01862 ATGGACGACCTCGGTGCCCAAGTTGTTCCTCCTATTTTCATCCACCAACCCTTGACCAGTCGCTACGCTGATCTGCCTTCCATCCCCAAGAAGCGTGCCTTATCGTATCAGGTCCCCAACTTCCATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCGCAAGATTCCTCACTAAACCCTCCAACCACTCCGATACTCTCTCATCCGAGCTCAAGAGGAAAGTCGATTTCACTGCTGCTACTCCCTCCTCCATCCACAAGAAGACGGTCGACGTTCTGGATGACGAGGATGACAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTTGAGGAGCCAGTGTCTAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGGCGCTGTCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTATCCAATGCCAAAGACTATCACCGGAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGAAATTCGATACCAATCTGCCCCCGTCTCCAAACAAACATTTTAACTGTTATTGCTATTAATAATCTTCCCCTCAGATTTCATCCTCTTTCGGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGACTAGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGGCCAGGAAGTAGAGGACCCCCAAGCACTGGGAATTTGGACATCGTCAGTTTATTGACTGTTCTAGCTAGGGCTCAAGGTAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCCGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAGGGGGAAGGCTCCTCCACAAAGTTCTTTGCAGCACCAAAACAAATTAAATGGAAATCCATCTTCTCCTTCCACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCACATCAGCTCCAGATGCTCTTGCAATGCTGTCTCAGAAGAGCAGTGTCAGCAGTGATAGTGAAAAAACAAGGTCGTCGTGCCCATCTGGTTCTGATCTCCAGAATAGGCCTATGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCGGATGGACAGGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGTTGTTTGGCTCTTCGCCTGAACATGAAGCCCCACCGAACTTGGCCGCTTCTAGAAAGTACTTCTCTTCTGACAGTAGTAATCCTATTGAAGAGAGGTCTCCGTCATCTTCACCTCCTCTCCTGCAAAAGTTGTTCCCAGTGCAAAGCACAGAAGAAACTACCAGTAATGGGAAAATACCAATCAGAAAAGAAGTTAGTGGCATTGAGGTTCGAAAGCCTCCCAGTAGCAATATTCCCTTTGAACTCTTCAGAGAGTCAGATAGAGCCAGACCAAATTCGTTTCGAACTGTTCCGTATCAAGCTGGATACACTTCTTCGGGTTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTCTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCAGTTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGATCTGCATGTTAAATCTTTGATTCATAGGGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTATGCTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAATCTCAGTGTCACCTTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAGGGGAAGGAATTTGAAAAATCCTGGCACCAGGATTCATTGCACGTCTATGGGAGGCTACGTATCTGAAGAAGTAATGGGATTAAGTAGGCAGGGAAAATACGATGAGATACATTCTGGAAGTTTCAAAGTTGGGGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAACAGTTTCCCTGTTATCATAGCTGATGCTACCATCTGTAGGGAATTGAGACATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCTGATATCAGTTCAGAAAGTCATTCATATGTTCCTTCGCAGCCAAGGCTAAGGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTTCTCTTACGAGCTAGACAATCCAGATTTTTTAATAAGGCGGTTCAGATTTTTACTCACATTCTCAGCAGAGAGAGACTTCTGTGCGTTGGTGAAAACACTTCTTGACATTTTGACAAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAGATTCAGCTCTTAAGCCGGTCAGTGAAAAGGAGGTGCAGGCAGATGGTTGACTTACTTGTTCATTATCACGTATCTGGCTTTGGTGATGCAGAGAAAAAATACCTCTTTCCACCAAATTTGATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCGTCAATGACAGATGCAGATGATTTGGTTGATGCACTAACAAATGACCCGCTGGAGATTGGGTTGGAGTGCTGGAGTTCCCAACTTGATGAAAACGGACAGTCGCCACGGGCTTATGCTTTAATGAGGGGTAATAATTCTTGTAATGAGCTGGTGGAGCGAAAACTTGGTGACAGAAAGAATGGTCAAGTTTCAGTAAGAATTAGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGATGCAGGGTGCAAAGTAGGTCCTGCTCCAGGTGTGCTGTTGTTGCAGCAAAGTGCAACAGGAGGGTTCCTGGGAGTGGTACACACAGGTTGCTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCCGTTTGCGTTTGCGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGCTACGGGACAATTTAG 3261 45.45 MDDLGAQVVPPIFIHQPLTSRYADLPSIPKKRALSYQVPNFHHQGQLHPHTWNPKAWDWDSARFLTKPSNHSDTLSSELKRKVDFTAATPSSIHKKTVDVLDDEDDSLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPGAVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRNSIPICPRLQTNILTVIAINNLPLRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFRGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLATSAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPMELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHEAPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNGKIPIRKEVSGIEVRKPPSSNIPFELFRESDRARPNSFRTVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWEQLEENLDLHVKSLIHREELDFWRSGRFLVYAGRQLASHKDGKIRLNKSSKAWSNPELISVSPLAVVGGQKTSFLLRGRNLKNPGTRIHCTSMGGYVSEEVMGLSRQGKYDEIHSGSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFDEFKVPDISSESHSYVPSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILTKKCLITDGLSMKSLEMISEIQLLSRSVKRRCRQMVDLLVHYHVSGFGDAEKKYLFPPNLIGPGGITPLHLAASMTDADDLVDALTNDPLEIGLECWSSQLDENGQSPRAYALMRGNNSCNELVERKLGDRKNGQVSVRIRNEIEQLEVSSGERCRVQSRSCSRCAVVAAKCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32143312 32148593 + ClCG11G019160.1 Cla11g01862 285684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01862 1086 MobiDBLite consensus disorder prediction 324 349 - -
Cla11g01862 1086 MobiDBLite consensus disorder prediction 532 554 - -
Cla11g01862 1086 MobiDBLite consensus disorder prediction 453 476 - -
Cla11g01862 1086 MobiDBLite consensus disorder prediction 327 349 - -
Cla11g01862 1086 MobiDBLite consensus disorder prediction 373 398 - -
Cla11g01862 1086 ProSiteProfiles Zinc finger SBP-type profile. 142 244 IPR004333 GO:0003677
Cla11g01862 1086 Gene3D - 136 231 IPR036893 GO:0003677|GO:0005634
Cla11g01862 1086 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 216 1086 - -
Cla11g01862 1086 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 39 191 - -
Cla11g01862 1086 MobiDBLite consensus disorder prediction 250 266 - -
Cla11g01862 1086 MobiDBLite consensus disorder prediction 373 426 - -
Cla11g01862 1086 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 216 1086 IPR044817 GO:0003677
Cla11g01862 1086 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 191 IPR044817 GO:0003677
Cla11g01862 1086 MobiDBLite consensus disorder prediction 406 423 - -
Cla11g01862 1086 Pfam SBP domain 216 243 IPR004333 GO:0003677
Cla11g01862 1086 Pfam SBP domain 145 191 IPR004333 GO:0003677
Cla11g01862 1086 MobiDBLite consensus disorder prediction 234 266 - -
Cla11g01862 1086 SUPERFAMILY SBT domain 216 248 IPR036893 GO:0003677|GO:0005634
Cla11g01862 1086 SUPERFAMILY SBT domain 143 192 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01862 - - - cmax:111474399 1828.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00605 Cla-Chr5:5550743 Cla11g01862 Cla-Chr11:32143312 6.00E-17 dispersed
Cla10g01123 Cla-Chr10:25656522 Cla11g01862 Cla-Chr11:32143312 5.37E-32 dispersed
Cla11g01862 Cla-Chr11:32143312 Cla05g00033 Cla-Chr5:456619 1.93E-27 dispersed
Cla11g01862 Cla-Chr11:32143312 Cla06g00193 Cla-Chr6:2256226 2.83E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62097 PF03110 SBP 8.30E-15 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01862 Cla_Chr11 FPKM 31.48325 36.74622 38.378708 39.128292 37.046284 36.924541 38.472496 57.185551 53.553638 54.196732