Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01863 ATGCTCCATCTTCTTCTTCTGCCATTCATTCTTTTAGCATCTTCTTCTGCGGCCGTTAACACCAAGCCCGGATGCCCTTCCAACTGTGGAAACGTCTCCGTTCCCTATCCTTTCGGCATCGGCGTTGGTTGTTACATGGCCACCGGGTTTGACATAACTTGCAATTCTTCGTATGATCCTCCATTACCTTTTCTAGGTACTGGTAACCTTCAAGTTGTGGAAATTTCTCTAACTAATCTCCGCATACGCAACTTTGTTTCTTTCAATTGCTACACCCAAACTGGTGCTCTCGCCCAGAGATCCAGCTCCTGGATCAACTTGGGCCGCCTCCCTATGTTCTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCCTGGCTTTGATCAGTGGCTCCGAGGGGCTCTCCTACACCAGTGGATGCGTCTCCATCTGCTCCAGCAAGGAAAGCGTGATCAATGGCTCTTGTTCTGGCATCGGGTGTTGCCAGACTGCCGTCCCCAGAGGCCTAAAGCGCTTCCAGAGCATGATTGGGAACCTCAACAACCACACCAAAACCTGGCAGTACAATCCTTGCAGTTACGCCTTCCTGGTTGACCAAGATCGCTACAACTTCGAGGTGTCTGATCTGGCGGATCCCAACTTTCTAGCCACCATTCAAAGCTTGCCAGTGGTTTTGGATTGGGTGGCGGGTAACCTGACATGTGAAGAGGCTCGGAAAGGCTTCTCAACCTACGTTTGTCAAGCCAATTCCGAATGCTATGATTCAGAGAGTGGAAGCGGTTATCAATGTGGTTGCAGCCCAGGTTTCAGTGGGAACCCGTATCTCACTTCTGGATGCCAAGACATTGACGAGTGTGCAGGCCCCAGCAACCCTTGCGAGGGCATATGCGTGAATACCCCTGGCAGTTATTACTGCTCATGTCCCCACGGTTCTTATGGTGATGGTAAGAAGGACGGCAAGGGCTGCATTACCAAAACCAAGCAATTTCCACTTATTCAACTCTCTCTTGGTCTTGGCTCCACTCTTCTCTTCCTTATCGTCACAGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAATCTCATTAAACTTAGAGAGAAATTCTTCCAACAAAACGGAGGATTCTTATTGCGCCAGCAGTTATCCCAACACCAAGCTGCCGTTGACTCCACAAAAATCTTCACGGCAGAGGAGCTGGAGAAAGCGACCGACAATTATGCTGAGACCCGAATTTTGGGCAAAGGCGGAAACGGGACTGTGTACAAAGGAATTCTGCCAGACGGCAAAATAGTGGCCATTAAGAAGTCCAAGATAGCAGATGAAAGCCAAATTGAACAATTCATCAATGAAGTCATAATTCTGGTCCAAATCAACCACAGAAATGTGGTGAAGCTCTTGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTCGTCTACGAATTCGTGTCCAATGGGACTCTACATGCCCATATTCATGACAACAACAGCTTTAATAGTAATTCTCTGTCTTGGGAAAACCGGTTGAGAATAGCGACGGAAACGGCTGCAGCTCTTTCTTACCTGCACTCTGCAGCGTCCACACCCATCATTCACAGAGACGTGAAGTCAGCGAACATATTGTTGGACAACAAATGCACTGCAAAAGTAGCCGATTTTGGAGCATCCAAGTTTATCCCAATGGATCAGTCGCAGATCACGACGTTGGTTCAAGGGACGTTTGGTTACTTAGACCCGGAGTATTTCCAAACGAGTCAATTGACGGAGAAGAGCGACGTGTACAGCTTTGGGGTGGTACTGTTAGAGTTGTTGACGGGAGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAGAGAAACCTGTCGTCGTATTTTGTAGCATCGTTGCGTGAGAAGAGGTTGTTTAGGATACTGGAGGGGAGAGTGCTGAGGGAGGGAAAGAGAGAGCAACTGATAGCAGCAGCGGAGCTAGCCAGGAGATGCTTGAAGCTGAAGGGGGAAGACAGGCCCAGAATGAGAGAAGTGGTGTCGGAGTTAGAAAGGTTGAGAAGGGAAGGTGAAGGTGAAGGTGAAGGTGTAAATGAGGAAGAGACACAAACTTTGTTGGAACCACAACAACAACATGCCTTAAACTCACTGGATTTGTACCCCATTTCCACTTCTACTTTTCAAGCCGCCCATGTCTACAATTACGAAGCATTCGTATCCGAGTCTAGTTCTTCCCAATACCAATACGACGTCGGATCCTCCTCCTCCACATCCCATCTCGTCCATTCATTCCACCTCTCGCGATGA 2301 48.85 MLHLLLLPFILLASSSAAVNTKPGCPSNCGNVSVPYPFGIGVGCYMATGFDITCNSSYDPPLPFLGTGNLQVVEISLTNLRIRNFVSFNCYTQTGALAQRSSSWINLGRLPMFFSTTNKFTVIGCDTLALISGSEGLSYTSGCVSICSSKESVINGSCSGIGCCQTAVPRGLKRFQSMIGNLNNHTKTWQYNPCSYAFLVDQDRYNFEVSDLADPNFLATIQSLPVVLDWVAGNLTCEEARKGFSTYVCQANSECYDSESGSGYQCGCSPGFSGNPYLTSGCQDIDECAGPSNPCEGICVNTPGSYYCSCPHGSYGDGKKDGKGCITKTKQFPLIQLSLGLGSTLLFLIVTATWLYFTIKKRNLIKLREKFFQQNGGFLLRQQLSQHQAAVDSTKIFTAEELEKATDNYAETRILGKGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILVQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLHAHIHDNNSFNSNSLSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDNKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFERSESQRNLSSYFVASLREKRLFRILEGRVLREGKREQLIAAAELARRCLKLKGEDRPRMREVVSELERLRREGEGEGEGVNEEETQTLLEPQQQHALNSLDLYPISTSTFQAAHVYNYEAFVSESSSSQYQYDVGSSSSTSHLVHSFHLSR 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32150679 32153567 + ClCG11G019170.2 Cla11g01863 285685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01863 766 SMART serkin_6 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01863 766 Pfam Wall-associated kinase 156 269 IPR013695 GO:0004674|GO:0016021
Cla11g01863 766 CDD EGF_CA 284 317 - -
Cla11g01863 766 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 299 310 IPR000152 -
Cla11g01863 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE 16 687 - -
Cla11g01863 766 Pfam Calcium-binding EGF domain 284 324 IPR001881 GO:0005509
Cla11g01863 766 Gene3D Transferase(Phosphotransferase) domain 1 485 707 - -
Cla11g01863 766 Pfam Protein kinase domain 409 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01863 766 Gene3D Phosphorylase Kinase; domain 1 383 484 - -
Cla11g01863 766 Gene3D Laminin 235 286 - -
Cla11g01863 766 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01863 766 Pfam Wall-associated receptor kinase galacturonan-binding 25 82 IPR025287 GO:0030247
Cla11g01863 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 687 IPR045274 GO:0007166
Cla11g01863 766 CDD STKc_IRAK 415 678 - -
Cla11g01863 766 SUPERFAMILY EGF/Laminin 282 326 - -
Cla11g01863 766 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cla11g01863 766 ProSitePatterns Calcium-binding EGF-like domain signature. 284 308 IPR018097 GO:0005509
Cla11g01863 766 SMART egf_5 287 326 IPR000742 -
Cla11g01863 766 SMART egf_5 236 283 IPR000742 -
Cla11g01863 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Cla11g01863 766 SMART egfca_6 284 326 IPR001881 GO:0005509
Cla11g01863 766 Gene3D Laminin 287 327 - -
Cla11g01863 766 ProSiteProfiles EGF-like domain profile. 284 317 IPR000742 -
Cla11g01863 766 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01078 Cla-Chr3:21226667 Cla11g01863 Cla-Chr11:32150679 1.48E-106 dispersed
Cla08g00642 Cla-Chr8:18552832 Cla11g01863 Cla-Chr11:32150679 1.98E-156 dispersed
Cla08g00643 Cla-Chr8:18583193 Cla11g01863 Cla-Chr11:32150679 9.69E-160 dispersed
Cla11g00635 Cla-Chr11:7301962 Cla11g01863 Cla-Chr11:32150679 5.62E-82 dispersed
Cla11g00720 Cla-Chr11:10015383 Cla11g01863 Cla-Chr11:32150679 6.13E-140 dispersed
Cla11g01863 Cla-Chr11:32150679 Cla04g00781 Cla-Chr4:22870003 2.30E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80969 PF00069 Pkinase 1.70E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01863 - - cmo:103493861 1228.77