Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01865 ATGGGCGCCTGTTTGTCTAGCAGCCTCATTATTCCCAAAGCCTCTTCTGTCCCCCCACCTCCTCCCACCGCCAAAGTGATCTCTTTACAAGGCCATCTCCGCGAATACCCTGTTCCCATCTCCGTCTCCCGCGTTCTTCAAACCGAGAATTCATCTTCTTCTACTTCCGACTCTTTTCTCTGCAACTCCGACCGCTTATACTACGATGATTTCATCCCGCCTTTGCCTCTCCACGACCACCTGCAGGCCAATCAGATCTATTTCCTTCTTCCTTCCTCCAAGCTCCACCAGCGATTGACCGCCTCCGATATGGCCGCCTTGGCCGTCAAAGCCACCGTCGCCCTCCAGAATTCGTCCACCAACGATGCCTCCCTCCGTCGTAAAAAGGGTCGTATTTCTCCCCTCCTTGATCTCCTTGGTCCCAATGACGAACACGAACACGAACACGAACACGCCCCCTCCATTGACTTCAAGAAGAAAGCCGCCGGCCCTACTACGTCCGCCTCCTCCGTCAGAAAATTGCAAAGACTGACATCCAGAAGGGCAAAACTGGCGCCGATCGAAGGCGGTCGTTGGAGTTGGTTGTCTGAGTGTGGCAACAGTAGTTGTCGACAACGATTGACGGGTGGAGCCATTGAAACCACTAGAGAGAGGGAGCGCATGAGAGATATGGAAGAGGTTGCGGTAGAAAAAGAACACGAAGGAGAATCGGAGACCCCTCGTGTTACAGCAAGACAATTGCAAGAAGCAGTTGATGCTCATCCAGATGACCCCTCATCCCATTTCAAACTCGGGATTTTCATGTGGGAAAATGGAGGAAGTCACGATAAGGCGGCTGCCGCGGACCATTTTCTCAAATCAGCGAAACTAGACCCTGGAAATGCTGCCGCTTTCAAATATCTTGGGCATTATTACGCCACATTTTCTGTCGACATCGAAAGGGCTCTCAAGTGCTACCAGAGAGCTGTCAGTCTCGATGTCGACGATTTCCACTCTGGAGAAGCCTTGTGCGATCTGTTGCATCACCAAGGAAAGGAGAGTTTAGAGGTTGCTGTATGCAGAGAGGCTTCCTCTAAGTCACCCAGGGCCTTCTGGGCTTTCCGGAGGTTGGGCTATTTGCAGGTTTATCAAAAGAAATGGACTGAAGCTGTCTTAAGTCTTCAGCATGCCATTCGAGGATATCCTCATTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCATATCAACGACTTGGTAGGTTTACTGCTGCAATTAAGTCTTATGCACGGGCCATTGAAATTGAAGGAGATAGAATTCTCGCTTGGGTTGAGAGTGGAAACATCTTCTTGATGCTTGGGCTTCTTGGTTTGGCAAAGGAATACATTAATAGGGGGGCATTTAAGTGGGCATCCTTCCTATTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACTCATTTAGCTGCAAACTCATCGTGTATCTGGAAGTTGCTTGGAGATATTCAGCACACATATGCAAAATGTTATCCATGGATGGAAGAGGACTGGGGACAATGCTCAGAATCCTTTAGAACTTCTATCCTTTCCTGGAAGCAGACCCGCAGTTTGGCTTTATTTTCTGCCAAATGTTCCTATCAGCAAGCCCTGCACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATATTATTTCATCTTTGAATGACGATTCTGGATTTGGATTCAATTCCTGGCAGATATCTGAAAAGATGACTTTAGGGGCTTTGATGCTCGAGGGTGACAATCATGAATTTTGGGTGGCAATGGGATGCATCTCTAACCATGATGCGTTGAAGCAACATGCTTTTATAAGGGCATTGCAGTTAGATGGATCTCTGGCTGGAGCCTGGGCTTATCTTGGGAAGTTATACTGGAATAGGGGCGAGAAGCAATTAGCAAGACAGGCTTTTGATTATGCTAGAAGTATAGATCCTTCTCTAGCATTACCCTGGGCTGGCATGTCGGCTGATTTGAACATTAGGGAGTCTTCATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCCAAGCTTTCTCTGCATGCAGGCCATCTTTCATCTCCACAGGTGTTCGGAGCCATACGTCAGGCTGTTCAACTTGCACCTTGTTACCCTGAATCCTATAATCTCAATGGACTAGCTTTTGAGGCACAATTAGATTATCAATCTGCTGTTGCTGCTTATCGTTTAGCACACCTCACAATTAGCCATTTTTCAGATAGAGTTCCAAGGTCTCATGTTGGAAATTTCTTTGAAGCTTTGCAGGAATGTGAAAATTTGAGTAAAGAAGGCATGCTCGACATTGAAGGTTTGCAGGTTTATGCATTCTCTCTATGGAAGCTAGGAAAGAATGACGAGGCTCTTAGCACTGTGAGAACACTTGCTTCTGGTATCTCTGCCATGGAAAGCACACGTATGGCTGCGTCTGTTGGTTTCATATGCAGACTGTTGTGTTCAATATCTGGACTGGATTCCACAATTAACAGTATCATGAAGATGCCAGCCAATTTCTTCCAGAGTTCAAAAATGAGCTTTGTAGTGGCTGCTGTTCATGCTCTTGATAGTTGTGAGCGCCTTGAGTCCATTGTTTTAAGCAGTCGTTCCTGCCTCCAATCTCATGAAGAGATTACTAGAATGCACATTTTGATTACTCTTTCTAAGCTGATCAAATATCGAACAAATAACTGCCTGGGATTTCTCAATGGAGTGATGCATCTTAGAAAAGCTCTTCATGCATACCCCAACAGTAATTTGATCAGGAACTTGCTTGGTTATCTGTTGCTATCCGACGAAGAAGGGGATGACAATCACATAGCTACTAGGTGTTGCAACATGTTTTATGGTTTTGACCAACAGAACAAAGGTCTGAAATCTGCATATGAAATTCATGGTGCTGGAGCTGTGGCCTGCTATACAATTGGCACGAGTCATCCGAGATGCTTACGTCAAGAGCCATGGAATTGTGATGTTCAATATCTTCTTATACTAAACATTCTGCAGAAGGCACGTGAAGAAAGATTTCCCTGTCATCTACGTTCAACTATTGAGCGGCTAATCTTGGTTGCCTTCTCCAATGAACCATATTTTGAGAAAGATACATCTCATCATTATAAAAAGTTTCAGCTTCTACTTTGTGCATCTGAGATCAGTTTGCAAGGCGGTGGCCAAATTAAATGCATCAACTATGCCAAAGCTGCTTCCTCTATTTCACTTCCTGAAATGTATCTTTTTTATGCACACTTGTTACTGTGCCGAGCCTATGCTGCAGAAAATGATTCTAACAACCTCCGTAAAGAGTTCATAAAATGTTTGGATTTAAAGACAGATAACTATCTTGGATGGGTATGCCTTAAATTCATTGCATCTGGATATGAGCTTCATGATGAATCCAATATATTAGAACTTAGTTTCAAGAAATGCTCATTAGAGAGCAAGAATCTGCAACACATGGTAATACCTATGTCTAGTCTGGTCGATGGTTTGATATCTTTTAGGAGCCAGGATTTTATGGCTGCTGAGAAGTATTTTGCACAAGCTTGTTCTTTGGGACACGATGATGGCTGTCTCCTCCTCTGTCATGTTCTTCAGGTTTCCATTTGTGCTATGCTTATTTATTTATTCAAATCCCTAATGAACTCAGGTGTAACCTGCATGGAACTTGCAAAGCAGCTTTGCAGTTCTCATTTCTTGAGGCTGGCTGTGAACAGTCTTCTTAAAGCTCAAGTAATTTCTGTTGTTCCAATACCAATTGTCTCGATCACACTGGCACAAGCAGAAGGGAGTCTTGGTCTGAAAGAAAATTGGGAGTCAGGCCTTCGTTTTGAATGGTTCTCGTGGCCACCAGATATGAGGCCTGCGGAGCTCTTATTTCAAATGCATCTACTTGCAAAACAGTCAAAAGTTGGTTCTGATCAATTGAGGGTTGAGTTATGTCAGTCTCCTCTGAGATGGGTTCTTCGTGCAATTCATGTAAACCCTTCTTGCATGAGATATTGGAAGGTGGTGCAAAGCTTGTGGAATGAGGGCTGA 4101 44.67 MGACLSSSLIIPKASSVPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRLYYDDFIPPLPLHDHLQANQIYFLLPSSKLHQRLTASDMAALAVKATVALQNSSTNDASLRRKKGRISPLLDLLGPNDEHEHEHEHAPSIDFKKKAAGPTTSASSVRKLQRLTSRRAKLAPIEGGRWSWLSECGNSSCRQRLTGGAIETTRERERMRDMEEVAVEKEHEGESETPRVTARQLQEAVDAHPDDPSSHFKLGIFMWENGGSHDKAAAADHFLKSAKLDPGNAAAFKYLGHYYATFSVDIERALKCYQRAVSLDVDDFHSGEALCDLLHHQGKESLEVAVCREASSKSPRAFWAFRRLGYLQVYQKKWTEAVLSLQHAIRGYPHCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWVESGNIFLMLGLLGLAKEYINRGAFKWASFLLEEASKVARGSTHLAANSSCIWKLLGDIQHTYAKCYPWMEEDWGQCSESFRTSILSWKQTRSLALFSAKCSYQQALHLAPWEANIYTDIAITLDIISSLNDDSGFGFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYWNRGEKQLARQAFDYARSIDPSLALPWAGMSADLNIRESSSDEAFESCLRAAQILPVAEFQIGLAKLSLHAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVGNFFEALQECENLSKEGMLDIEGLQVYAFSLWKLGKNDEALSTVRTLASGISAMESTRMAASVGFICRLLCSISGLDSTINSIMKMPANFFQSSKMSFVVAAVHALDSCERLESIVLSSRSCLQSHEEITRMHILITLSKLIKYRTNNCLGFLNGVMHLRKALHAYPNSNLIRNLLGYLLLSDEEGDDNHIATRCCNMFYGFDQQNKGLKSAYEIHGAGAVACYTIGTSHPRCLRQEPWNCDVQYLLILNILQKAREERFPCHLRSTIERLILVAFSNEPYFEKDTSHHYKKFQLLLCASEISLQGGGQIKCINYAKAASSISLPEMYLFYAHLLLCRAYAAENDSNNLRKEFIKCLDLKTDNYLGWVCLKFIASGYELHDESNILELSFKKCSLESKNLQHMVIPMSSLVDGLISFRSQDFMAAEKYFAQACSLGHDDGCLLLCHVLQVSICAMLIYLFKSLMNSGVTCMELAKQLCSSHFLRLAVNSLLKAQVISVVPIPIVSITLAQAEGSLGLKENWESGLRFEWFSWPPDMRPAELLFQMHLLAKQSKVGSDQLRVELCQSPLRWVLRAIHVNPSCMRYWKVVQSLWNEG 1366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32166491 32188464 + ClCG11G019190.2 Cla11g01865 285687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01865 1366 Pfam PADRE domain 1 183 IPR025322 -
Cla11g01865 1366 SUPERFAMILY TPR-like 247 345 IPR011990 GO:0005515
Cla11g01865 1366 MobiDBLite consensus disorder prediction 136 174 - -
Cla11g01865 1366 ProSiteProfiles TPR repeat region circular profile. 398 428 - -
Cla11g01865 1366 Gene3D Tetratricopeptide repeat domain 524 821 IPR011990 GO:0005515
Cla11g01865 1366 Gene3D Tetratricopeptide repeat domain 242 496 IPR011990 GO:0005515
Cla11g01865 1366 ProSiteProfiles Rhodanese domain profile. 322 389 IPR001763 -
Cla11g01865 1366 Pfam Tetratricopeptide repeat 370 425 - -
Cla11g01865 1366 SMART tpr_5 398 431 IPR019734 GO:0005515
Cla11g01865 1366 SMART tpr_5 625 658 IPR019734 GO:0005515
Cla11g01865 1366 SMART tpr_5 364 397 IPR019734 GO:0005515
Cla11g01865 1366 SMART tpr_5 444 477 IPR019734 GO:0005515
Cla11g01865 1366 SMART tpr_5 729 762 IPR019734 GO:0005515
Cla11g01865 1366 SMART tpr_5 295 329 IPR019734 GO:0005515
Cla11g01865 1366 MobiDBLite consensus disorder prediction 140 157 - -
Cla11g01865 1366 SUPERFAMILY TPR-like 361 755 IPR011990 GO:0005515
Cla11g01865 1366 ProSiteProfiles TPR repeat profile. 398 431 IPR019734 GO:0005515
Cla11g01865 1366 ProSiteProfiles TPR repeat profile. 625 658 IPR019734 GO:0005515
Cla11g01865 1366 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 233 1031 - -
Cla11g01865 1366 PANTHER SUPERKILLER 3 PROTEIN-RELATED 233 1031 IPR039226 GO:0006401|GO:0055087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01865 K12600 SKI3, TTC37; superkiller protein 3 - csv:101220693 1993.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01751 Cla-Chr9:34877774 Cla11g01865 Cla-Chr11:32166491 1.03E-10 dispersed
Cla11g01865 Cla-Chr11:32166491 Cla02g01269 Cla-Chr2:26686015 4.11E-10 dispersed
Cla11g01865 Cla-Chr11:32166491 Cla01g01599 Cla-Chr1:30710782 1.30E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g20 . Blo12g00837 . Bda03g00338 . Bpe04g00298 Bma04g00307 Bma01g02430 . . Cma01g02054 . Car01g01618 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02439 Csa04g02753 . . . . . . . . . . . Cmo01g02110 . . . . . . Cpe02g00004 . . . . . . . Cla11g01865 Cam11g1935 Cec11g1960 Cco11g1974 Clacu11g2100 Cmu11g1902 Cre11g2310 . . Chy07g00441 Cme07g00009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01865 Cla_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0