Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01868 ATGGTGAAGGAGACGGAATACTATGACGTGCTTGGAGTCAGCCCCGCGGCTACAGAAGCCGAAATCAAGAAAGCTTATTACATCAAGGCACGGCAGGTTCATCCAGATAAAAACCCGAGTGATCCTCTGGCAGCACAAAAATTTCAGGTTCTAGGAGAAGCTTACCAAGTATTAAGCGATCCAGCTCAAAGACAAGCTTATGATGCTCATGGGAAGTCTGGAATCTCAACTGATGCAATTATTGATCCTGCAGCAATTTTTGCAATGCTTTTTGGAAGTGAACTTTTTGAGGAATACATAGGTGAGCTTGCCATGGCATCGATGGCTTCTCTGGACATTTTCACTGAAGGGGAGCAATTTGATGCTAAACGGTTGCAAGAGAAGATGAGGATTGTCCAAAAGGAAAGAGAAGAAAAACTTTCAGAAATTTTGAAAGGTCGTCTCAACCAGTATGTTCAAGGGAACAAAGATGATTTTATTAATCATGCTGAAGCTGAAGTAGCAAGACTCTCCAACGCAGCCTATGGAGTTGACATGTTAAACACAATTGGTTATATATATGCCAGACAGGCTGCTAAAGAGCTTGGGAAGAAGGCAATTTATTTGGGCGTGCCATTTGTTGCTGAGTGGTTCAGAAACAAAGGGCACTTCATAAAATCCCAGGTCACAGCAGCCACAGTGCCCTATCTGTTGGTTCTTCTCTCAAAGAAAAAGCTGATGAAGGAGTTATCCATCTTTCAAAATTCTGTGTTCATGGTTGCTGGTTTATGGAGTGTGCAGTCTGGCCTTCGAGGGGTGGAAGGAAGAATATTCATGTCCCTTTTGGTGCTGACAAGGATGGCAGGTGCTATTGCATTGATTCAACTGCAGGAGGACATGAAAAAGCAACTTAGTGCTGAAGGAAATTATACTGAAGAAGAGCTTGAAGAATACGTGCAATCTCATAAGAAATTGATGATTGATTCCCTCTGGAAATTGAACGTGGCTGACATTGAGGCCACTCTTTCCCGTGTCTGTCAACAGGTTCTTCAAGACAACAACGTCAAGAAGGAGGAGCTCCGTGCAAGGGCGAAGGGATTGAAAACTCTTGGTAAAATTTTCCAGAGGGTTAAGTCAACCAATGGGAATGAGAGTGAACCAGTAGTAAAAGGTTCAGTAGACAAACTGAATGGAAGTGAATCAAGCCATGATGCTTCCCCAATTTCAACACTGAAATCTTCCGGCTATGAAGAAACATCTTTTGCAACACAGAGTCCCTATGTGGAGGCTCCCAATTTTGCAGGTGCACACTTTAATAACTATTTCCCCAGGCCAACACCGCCTCCAGATATGGTTGTATGTGTGGATAATCTTGCTAGAAAGCAGCTGCCATTCCTTTACTCGGGGGATGTGTTTGTTGTGGATATGTATTTAACAGACAGACTAATGGCTGTAGTCGGAACTTCTCATCATTCTGGCTGGCTGTGTTCACCGTTGGCCGCTTGGTGGTGA 1491 43.66 MVKETEYYDVLGVSPAATEAEIKKAYYIKARQVHPDKNPSDPLAAQKFQVLGEAYQVLSDPAQRQAYDAHGKSGISTDAIIDPAAIFAMLFGSELFEEYIGELAMASMASLDIFTEGEQFDAKRLQEKMRIVQKEREEKLSEILKGRLNQYVQGNKDDFINHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATVPYLLVLLSKKKLMKELSIFQNSVFMVAGLWSVQSGLRGVEGRIFMSLLVLTRMAGAIALIQLQEDMKKQLSAEGNYTEEELEEYVQSHKKLMIDSLWKLNVADIEATLSRVCQQVLQDNNVKKEELRARAKGLKTLGKIFQRVKSTNGNESEPVVKGSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHFNNYFPRPTPPPDMVVCVDNLARKQLPFLYSGDVFVVDMYLTDRLMAVVGTSHHSGWLCSPLAAWW 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32209662 32234774 - ClCG11G019240.2 Cla11g01868 285690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01868 496 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Cla11g01868 496 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cla11g01868 496 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cla11g01868 496 PRINTS DnaJ domain signature 43 63 IPR001623 -
Cla11g01868 496 PRINTS DnaJ domain signature 63 82 IPR001623 -
Cla11g01868 496 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 1 235 - -
Cla11g01868 496 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 278 418 - -
Cla11g01868 496 CDD DnaJ 6 60 IPR001623 -
Cla11g01868 496 Pfam X-domain of DnaJ-containing 133 379 IPR026894 -
Cla11g01868 496 Gene3D DnaJ domain 1 83 IPR036869 -
Cla11g01868 496 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 235 - -
Cla11g01868 496 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 278 418 - -
Cla11g01868 496 SUPERFAMILY Chaperone J-domain 2 99 IPR036869 -
Cla11g01868 496 Pfam DnaJ domain 6 68 IPR001623 -
Cla11g01868 496 Coils Coil 122 142 - -
Cla11g01868 496 SMART dnaj_3 5 63 IPR001623 -
Cla11g01868 496 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01868 - - - pda:103711922 554.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00407 Cla-Chr2:3986715 Cla11g01868 Cla-Chr11:32209662 1.46E-09 dispersed
Cla11g00394 Cla-Chr11:4415280 Cla11g01868 Cla-Chr11:32209662 2.73E-11 dispersed
Cla11g01868 Cla-Chr11:32209662 Cla08g00652 Cla-Chr8:18724501 4.21E-25 dispersed
Cla11g01868 Cla-Chr11:32209662 Cla09g00355 Cla-Chr9:3481990 5.45E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01868 Cla_Chr11 FPKM 2.69428 2.956549 96.732887 99.419312 390.508331 342.366852 370.990784 5.098247 5.621112 3.380825