Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0001 ATGCCACCTGCCCTAGTTGTCGAGTCCGTCGAGTCCGTCGAGCCTGAGAAGGAGAGCCACCAACTCTCGTCTGCAGCCGAATTGGAGAAGAAGCTTGAGTGGGATGACAAACCGATTGTTGAAGACGTGGATGACGACGAGGATGATGACGAGGATGATGAAGATGACGGAAAGGAGAACGGGGCTCTTGGTTCAAATGAGAGTTCAAAGCAGAGCCGGAGTGAAAAGAAGAGTCGCAAGGCTATGCTGAAGCTGGGTATGAAACCAGTTACTGGGGTTAGCAGAGTAACAATTAAAAGAACAAAAAACATTCTGTTTTTCATATCAAAACCTGATGTGTTCAAAAGTCCAAATTCTGAGACGTATGTGATATTTGGAGAGGCAAAGATAGAGGATTTGAGTTCTCAGTTGCAGACACAAGCTGCTCAGCAATTCAAGATGCCAGACATGGGGCATGTGATGGGAAAACCAGACATTTCTGGTACTGTTGAAGCCGGAGCATTGGGTGATGAGGAAGAGGAAGAAGAGATCGATGAATCTGGGGTGGAGGCTAGGGACATTGATTTGGTAATGACACAGGCTGGGGTCTCCAGGACCAAGGCCGTAAAAGCTCTCAAGACTCACGACGGGGATATTGTAAGTGCCATTATGGAGCTCACAACTTGA 666 47.45 MPPALVVESVESVEPEKESHQLSSAAELEKKLEWDDKPIVEDVDDDEDDDEDDEDDGKENGALGSNESSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFKMPDMGHVMGKPDISGTVEAGALGDEEEEEEIDESGVEARDIDLVMTQAGVSRTKAVKALKTHDGDIVSAIMELTT 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 105201 106525 + ClG42_01g0000100.10 Clacu01g0001 239385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0001 221 SMART NAC_2 75 131 IPR002715 -
Clacu01g0001 221 Pfam NAC domain 75 130 IPR002715 -
Clacu01g0001 221 Gene3D - 182 219 - -
Clacu01g0001 221 MobiDBLite consensus disorder prediction 39 58 - -
Clacu01g0001 221 MobiDBLite consensus disorder prediction 11 38 - -
Clacu01g0001 221 MobiDBLite consensus disorder prediction 1 83 - -
Clacu01g0001 221 Pfam HYPK UBA domain 182 220 IPR044034 -
Clacu01g0001 221 CDD UBA_NAC_euk 184 220 - -
Clacu01g0001 221 Gene3D - 81 134 IPR038187 -
Clacu01g0001 221 ProSiteProfiles NAC A/B domain profile. 72 137 IPR002715 -
Clacu01g0001 221 CDD NAC_NACA 86 133 - -
Clacu01g0001 221 FunFam Putative nascent polypeptide-associated complex subunit alpha 182 219 - -
Clacu01g0001 221 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 14 221 IPR016641 GO:0005737(PANTHER)|GO:0005854(InterPro)|GO:0006612(PANTHER)|GO:0051082(PANTHER)
Clacu01g0001 221 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 82 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0001 K03626 - - vvi:100854239 263.462
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0001 Clacu-Chr1:105201 Clacu04g0644 Clacu-Chr4:20238631 1.80E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001063 2 3 1 2 2 2 3 2 2 2 3 3 5 2 2 5 3 6 3 2 1 2 3 2 2 2 3 5 2 2 79