Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0011 ATGGCAATAAGGTTTGTTGAATTAAATTGGGGGGACGTGATAATCGCATATTTGGAAAGAAAATTAGCTCCCTTAGTCCCGCCTCCCGCGCCTGTGGCTGTGGTATATTATCCTCTATTACGACCTAACCCTAAGCCCTTCGTCATCCCGTCCGGTCGCTGCGAAAGGAGGATCCCCGACACACCAGCTCTTCTTTCACCCCTTGCTGAGCCGCAGTACTGTCGCCATCGCTTTTCACTTTCTCGCTCCACTTTACTTCGTCGGTTTCTTAATCTTTGGTATGTTGCTCTCGTTACTCGTTACTTATATCTAATCACTGCGTGGATTGTTTTCTCAATGCTGTTAAGAGAGCTGAGTAAGATGAGTAGTCGATTTTCTCGTACAATATATGTTGGAAACTTGCCCTCAGACATAAAGGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGTGGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGACGGAAGTCCCACCAGGAGCAGGAGCAGAAGCCGTAGTAGAAGCCGGAGCCGGAGCCGAAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGA 1191 46.94 MAIRFVELNWGDVIIAYLERKLAPLVPPPAPVAVVYYPLLRPNPKPFVIPSGRCERRIPDTPALLSPLAEPQYCRHRFSLSRSTLLRRFLNLWYVALVTRYLYLITAWIVFSMLLRELSKMSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 166705 173320 - ClG42_01g0001100.10 Clacu01g0011 239395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0011 396 Pfam RNA recognition motif 129 196 IPR000504 GO:0003723(InterPro)
Clacu01g0011 396 Pfam RNA recognition motif 247 309 IPR000504 GO:0003723(InterPro)
Clacu01g0011 396 SMART rrm1_1 128 198 IPR000504 GO:0003723(InterPro)
Clacu01g0011 396 SMART rrm1_1 246 315 IPR000504 GO:0003723(InterPro)
Clacu01g0011 396 CDD RRM2_SF2_plant_like 245 320 - -
Clacu01g0011 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723(InterPro)
Clacu01g0011 396 MobiDBLite consensus disorder prediction 330 350 - -
Clacu01g0011 396 Gene3D - 116 244 IPR012677 -
Clacu01g0011 396 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 119 341 IPR050374 GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)
Clacu01g0011 396 FunFam serine/arginine-rich splicing factor SR34A-like 245 322 - -
Clacu01g0011 396 Gene3D - 245 322 IPR012677 -
Clacu01g0011 396 MobiDBLite consensus disorder prediction 321 396 - -
Clacu01g0011 396 MobiDBLite consensus disorder prediction 363 385 - -
Clacu01g0011 396 MobiDBLite consensus disorder prediction 201 236 - -
Clacu01g0011 396 SUPERFAMILY RNA-binding domain, RBD 126 315 IPR035979 GO:0003676(InterPro)
Clacu01g0011 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 202 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0011 K12890 - - csv:101210036 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0011 Clacu-Chr1:166705 Clacu03g1767 Clacu-Chr3:31403563 7.20E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127