Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0023 ATGCCATCGGATCCGAACAATACGTTCCCTCTTCACCTTTTCTCAATCTTGATAAATGGCTTCGGATCCGAAGATTGCTGGCTTGTAATCTCTGGGAAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCTACGAACGATTTCGAAGATGTTGGGCACAGCGATTCAGCAAGAGAAATGATGGACAAATATTACATTGGAGAAATTGATCCTTCAACAGTTCCTTTGAAGAAGATTTACATTCCATCACAACAAACGCAGTATAACCCAGATAAGACACCCGAGTTTGTGATTAAGATCTTGCAGTTTTTGGTTCCCATATTGATTTTGGGTTTGGCGTTTGCTGTTCGACACTACACCAAGAATGAATAA 417 41.01 MPSDPNNTFPLHLFSILINGFGSEDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTQYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 235846 237784 - ClG42_01g0002300.10 Clacu01g0023 239407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0023 138 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 40 47 IPR018506 GO:0020037(InterPro)
Clacu01g0023 138 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 22 91 IPR036400 -
Clacu01g0023 138 SMART Cyt_b5_2 9 85 IPR001199 -
Clacu01g0023 138 Gene3D - 19 90 IPR036400 -
Clacu01g0023 138 Pfam Cytochrome b5-like Heme/Steroid binding domain 22 84 IPR001199 -
Clacu01g0023 138 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 24 85 IPR001199 -
Clacu01g0023 138 FunFam Cytochrome b5 type B 19 89 - -
Clacu01g0023 138 PRINTS Cytochrome B5 signature 44 58 IPR001199 -
Clacu01g0023 138 PRINTS Cytochrome B5 signature 34 44 IPR001199 -
Clacu01g0023 138 PRINTS Cytochrome B5 signature 72 84 IPR001199 -
Clacu01g0023 138 PRINTS Cytochrome B5 signature 59 66 IPR001199 -
Clacu01g0023 138 PANTHER CYTOCHROME B5 23 136 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0023 Clacu-Chr1:235846 Clacu05g0379 Clacu-Chr5:3246844 2.20E-47 dispersed
Clacu01g0023 Clacu-Chr1:235846 Clacu05g0057 Clacu-Chr5:816252 1.30E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0023 K23490 - csv:101207109 239.195