Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0028 ATGGATACTGCTCATTGGCCACAGTTTGCAGGTGGTGGAGTGGTTGTTAAACAAATGGAAGGAGGTGGATCATCAAGTTCTTCAAAGCCTAATAACAATAACAACAACAACAATAATAATGGTAATTTGTTGGAGAGAAAAGCAAGACCTCAAAAGGAGCAAGCTTTGAATTGTCCAAGGTGCAATTCGACCAACACAAAATTCTGTTATTACAACAATTACAGCCTGTCTCAACCAAGGTATTTTTGCAAAGCTTGTCGGAGGTATTGGACTGAAGGTGGTTCTTTAAGGAATGTTCCAGTGGGTGGTGGTTCAAGGAAGAACAAAAGATCTTCACTTTCATCATCAGCTGATAAGAAGATCAACGCCTCTGATCAAAACCCTAAAATCATCCATCATGCTCATCAAGATCTCAATCTTGCAATCTTCCCTCCAAACAATAATAATAATAATAATACTCCTCCTATTCCTTCTTCTACTTCTACTTCTTCTTCTTCTCACCTTTTGGGTTCTTTCATGACGGCGGCACCGGCGGCCGGAGTGTTCAATGGCGGTGGTGGGTTTGGATTGAGCGAGCTGAAGCCATCAAGTTTAAGTTTTTCTTTGGAAGGGTTTGAGAATGGTGGAGGGTATGGGGATCTTCATCATAATCATCATCATCATCATCATCATCATCATCATCATCAAGATCAGACGGCTGTGATGTTTCCAATGGAAGAATTGAAGCAAAGTAATGGAAGAGGTGAATTTGAGGAGAATAGGGGAGGAGGAGGGCATGGAGCTGGGGATAACAATTCAGGTGGTGGATTTTGGAATGGAATGTTGGGAGGTGGATCATGGTCAGAAATGTCAGATGTGAAAGCCTTTATGATTCTTCCACTTCCACTTCCACTTCCAATTCCAACCATATTTAAAGCTAAAGCCTATGGAATTCCCATTTCATGTATGGAAAGAAGGCAAACCAAAGTGAAGTAG 975 41.33 MDTAHWPQFAGGGVVVKQMEGGGSSSSSKPNNNNNNNNNNGNLLERKARPQKEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSSLSSSADKKINASDQNPKIIHHAHQDLNLAIFPPNNNNNNNTPPIPSSTSTSSSSHLLGSFMTAAPAAGVFNGGGGFGLSELKPSSLSFSLEGFENGGGYGDLHHNHHHHHHHHHHHQDQTAVMFPMEELKQSNGRGEFEENRGGGGHGAGDNNSGGGFWNGMLGGGSWSEMSDVKAFMILPLPLPLPIPTIFKAKAYGIPISCMERRQTKVK 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 271276 273468 - ClG42_01g0002800.10 Clacu01g0028 239412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0028 324 MobiDBLite consensus disorder prediction 20 43 - -
Clacu01g0028 324 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g0028 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 217 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0028 324 MobiDBLite consensus disorder prediction 16 43 - -
Clacu01g0028 324 MobiDBLite consensus disorder prediction 246 266 - -
Clacu01g0028 324 MobiDBLite consensus disorder prediction 105 123 - -
Clacu01g0028 324 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g0028 324 MobiDBLite consensus disorder prediction 97 126 - -
Clacu01g0028 324 MobiDBLite consensus disorder prediction 141 166 - -
Clacu01g0028 324 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0028 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0028 Clacu-Chr1:271276 Clacu03g0249 Clacu-Chr3:2904109 2.60E-30 dispersed
Clacu01g0161 Clacu-Chr1:1613349 Clacu01g0028 Clacu-Chr1:271276 2.10E-37 transposed
Clacu08g0805 Clacu-Chr8:18118463 Clacu01g0028 Clacu-Chr1:271276 3.30E-28 transposed
Clacu01g0028 Clacu-Chr1:271276 Clacu05g0075 Clacu-Chr5:922581 2.10E-27 wgd
Clacu01g0028 Clacu-Chr1:271276 Clacu05g1070 Clacu-Chr5:9552146 3.40E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1009 . . Bda05g00131 Bda07g01944 Bpe03g00228 . Bma10g01308 Bma14g02017 Cmo16g00040 . . Cma15g01014 . Car15g00949 . . Cpe14g00027 Bhi01g01514 . . . Hepe07g0043 Mch10g0043 . Cla01g00029 Cam01g0028 Cec01g0026 Cco01g0028 Clacu01g0028 Cmu01g0027 Cre09g2479 . Cone5ag0708 . . . . . Cme06g01166 Blo07g00326 Blo09g00015 . . . . . . . . Cmo15g01079 Cma16g00034 . Car16g00033 . . Cpe13g00322 Bhi12g00672 . . . . . . Cla05g00985 Cam05g1076 Cec05g1083 Cco05g1076 Clacu05g1070 Cmu05g1021 Cre05g1095 Lsi09g00009 Csa03g01968 Chy06g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46923 PF02701 zf-Dof 1.10E-33 No_clan Clacu TF