Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0029 ATGATGCGCAAGCGGAGAACTCTTGCTCCCAAACCCTCTTCCCCCCATCATTTTGCATCACATCACCACGAATACGACGACATTTCCTGTCAGAACTGCGGCTCCGGCGACTCTCCCGCCCAGCTTCTTCTCTGCGACAAATGCGATCGAGGGTATCATCTCTTTTGTCTTACCCCCATCCTTGCTTCCGTCCCCAAGGGATCCTGGTTCTGCCCCACTTGCTCCAACCACAAGAATCTCAAATCTTTCCCTCTTGTGCAAACTAAAATTGTTGATTTTTTCCGCATCCAAAGACCTGCGGACTCTCAAACGGACTTAAGCCTAGAAAACCGAAAGAAGCGAAGACGGGCTGGTAGCTTAGTACTTAGTAAAAAGAGAAGGAAGCTCTTGCCATTTAATCCAACAGCAGACCCTGCGAGACGCTTGGAACAAATGGCATCACTGGCAACAGCATTGACGGCTACAGGTACAGATTTCAGCAATGAGCTTACATATATGCGTGGCATGGCACCAAGGTCAGCAAACTGCCCATCTCTTGAGCACGGAGGAATGCAGGTTCTTCCAAAGGAGGATGTTGAAACCTTGAACTTGTGCAGAAGTATGATGGAAAGAGGGGCATGGCCCCCCCTTATGGTTGTTTTTGATCCTCGAGAAGGGTTCACCGTGGAAGCAGATAGGTTTATAAAGGACTTGACCATAATTACAGAATATACGGGGGATGTTGATTACTTGAGGAACCGTGAACATGATGATGGGGATAGTATGATGACATTACTGTCTGCGACTAACCCATCTAAAAGCCTCGTCATCTGTCCTGACAAACGTAGTAACATTGCCCGTTTTATAAATGGAATCAACAACCATACACCGGAGGGTAGGAAAAAGCAAAACCTTAAGTGCGTAAGGACTTGCACTATGGGGATAAGGGCCTTTGTCTTGGGCTGGAATTCATCGAAGAAAACCAAAATGGTACTCCCCGGTCCAGATGGAATGGATCTTTTAGTTAGGCTGTACCCTGAGTTTAGAGAACAATTTGCTGGTAGCGAAATGCCCATATATTGGGCCAACTGGTGCAGATCTAATTTTTCTAATGCTTCCAGGAATTGGTCATCAGGTCCATTCCTCTTTGAGTTGCAAAGATCTGAAGGAGCAAGAAAGCTGAAAAACAAAACCAACCAAAAGGGATACCTTTGGCTGAGGCTGGATGTGTTCCTTCGATATATATTATGTTTACATATGCCGGAGAATGAGAAACGAGGAAGAAAAGGAAAGCATGGAGTGTCACGTTGTGTTGTGACTTGTGAGAAATCTTACAAGATATGTTGTACGAATGTGGATTACAGCGGAGAAGTAATTCAATACATATTGATACTGATACCACTTGCCCACACTACCCTCTCATTTGCCTGTCAGCCGTCAGATATGGATGATCAGATGTCACTTCCTCAACCATTGTCCCACATCCCCCCTCTGTTCATTTTGATGCATTCCTACCATTACTATGGTGGTCCTTTTTCTCAGTATGAGAAATAA 1533 45.27 MMRKRRTLAPKPSSPHHFASHHHEYDDISCQNCGSGDSPAQLLLCDKCDRGYHLFCLTPILASVPKGSWFCPTCSNHKNLKSFPLVQTKIVDFFRIQRPADSQTDLSLENRKKRRRAGSLVLSKKRRKLLPFNPTADPARRLEQMASLATALTATGTDFSNELTYMRGMAPRSANCPSLEHGGMQVLPKEDVETLNLCRSMMERGAWPPLMVVFDPREGFTVEADRFIKDLTIITEYTGDVDYLRNREHDDGDSMMTLLSATNPSKSLVICPDKRSNIARFINGINNHTPEGRKKQNLKCVRTCTMGIRAFVLGWNSSKKTKMVLPGPDGMDLLVRLYPEFREQFAGSEMPIYWANWCRSNFSNASRNWSSGPFLFELQRSEGARKLKNKTNQKGYLWLRLDVFLRYILCLHMPENEKRGRKGKHGVSRCVVTCEKSYKICCTNVDYSGEVIQYILILIPLAHTTLSFACQPSDMDDQMSLPQPLSHIPPLFILMHSYHYYGGPFSQYEK 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 286516 290627 + ClG42_01g0002900.10 Clacu01g0029 239413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0029 510 Gene3D SET domain 114 314 IPR046341 -
Clacu01g0029 510 MobiDBLite consensus disorder prediction 1 20 - -
Clacu01g0029 510 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Clacu01g0029 510 SMART PHD_3 29 75 IPR001965 -
Clacu01g0029 510 CDD PHD_BAZ2A_like 29 74 - -
Clacu01g0029 510 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Clacu01g0029 510 Pfam PHD-finger 30 74 IPR019787 -
Clacu01g0029 510 SUPERFAMILY FYVE/PHD zinc finger 21 81 IPR011011 -
Clacu01g0029 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 90 IPR013083 -
Clacu01g0029 510 SUPERFAMILY SET domain 200 283 IPR046341 -
Clacu01g0029 510 PANTHER N-METHYLTRANSFERASE ATXR5, PUTATIVE-RELATED 26 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0029 K24406 - - csv:101205046 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0029 Clacu-Chr1:286516 Clacu02g0064 Clacu-Chr2:645190 6.80E-102 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46924 PF00628 PHD 2.90E-11 CL0390 Clacu TR