Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0038 ATGTCGACTTTCCTTCTTCTATCTTCTCAATCTTCCACCTCGCACAGGGTGAGCGAAATCTGTCTTTGCCTGCAGTCATTGCAGTTGCAAAAGGGCATCACATGCCCTTCAGTTTGCCTTCAGAAACAGAAATATAATATCAAGCTTTATGCTGTACCTGTTGGAGCCTTTTCTTGTCGCTTTGCACCAACACCTTCTGCTTCTAATAGAGCTGATTTGGGGGGTCAGAGGAAACATCTTTCTTCTGCCTTCACTGCTCCAAATGGATATCAGAGTAGGCCTGAGCTCATGCACAACCGTACTGATGGGAACAGCATGATTGAGTTTGAAGTTCAGTTGGAAGAATTATTCAATGAGGTCAAAATGATGGCTATGAGCGGGAGGAAGAATGATGCTGTCGAGCTACTTCAAGCTAATTATGAAGCTGTAAAAGAACAGATGGAATCAGGTGCTATTGGCATCGAACAAGCCGCTGTTCTTGACATCGTGGCTTTGGGGTATATAACTGTTGGAGACTTGAAGTTTGTTGCTTCTGTATTGGATATATTGAACAAGGTTGTTGACAGTCTGGAGGACAGTGAACCCTTTCTGGATTCAGTGCTTCTGCATATGGGGAGCATGTACTCAACTTTAAAAAAGTTTGAGAAATCAATGTCTGCATACAAGAGGGCTATTGATATCATAGAGAAGAAAAGTGGAGAGGACAGTACCTTTCTTATCACTCCAATTTTAGGGATGGCTAAAGTTCTTGGTATCATTGGAAGAACTGCAAAGGCTGTAGAGTTTTACCATCGTGCAATTTCACTTCTGGAATCAACCAGAGGCTTTGAGAACGAGGATTTGGTTATACCTTTATTTGGTCTGGGCAATCTAATGCTCAAAGAAGGAAAAGGCAAGGATGCAGAAACTTGTTTTGCTAGGATTGTGGACATATATAAAAAGTTATATGGAGAAAAGGATGGAAAAGTTGGAATGGCTATGTATTCTCTGGCTAATGCAAAGTGTGCAAGAGGGGAAGCAGACGAAGCTGTTACCCTATATAGAAGAGCTTTGCACATTATCAAGGATTCAAATGATATGGCTTTAGACGACAGCGTGATGGAGAAGATGAGGATTGAGTTGGCAGAACTATTGCATGTTGTTGGAAGGGGGAGTGAAGGCAGAGAAATTCTAGAAGAGTGTTTGTTGATCAATGAAAGATCGAAAGGAAAAGAGCATCCCAGCTCAGTGAAGCACCTTGTAAACCTTGCAGCTTCTTATTCAAGGTCAAAGAATTATGCTGAGGCTGAGCGTCTGTTGCGAATTGGATTGGACATTATGATAAAGGCAGTGGGACCTGATGATCAATCAATTACAGTCCCCATGTTGAATCTTGCTGTCACTCTTTACAATCTAAAACAAGACGACAATGCTGAGCAACTTGCACTGGAAGTTTTGCGAATACGGGAAAGTGCTTTTGGAAAAGATTCTCTTCCTGTTGGTGAGGCTCTAGATTGTCTGGTTTCCATTCAAAGCAGGCTAGGGAAGGATGAAAACGAGCTACTGAAGCTGCTTAAGAGAATTCTTAGAATCCAGGAGAGAGAGTTCGGGCATGATGGAAAAGAGGTCATTGATACCCTCAAGAAAATAGTGTTCTACATGGAAAAACTAGGAATGAAAGATGAGAAGTTTCTACTTCAAAAACGACTGTCCATGCTGCGGATGAAATTCAAGAACCAGATGCAATACTAA 1731 41.77 MSTFLLLSSQSSTSHRVSEICLCLQSLQLQKGITCPSVCLQKQKYNIKLYAVPVGAFSCRFAPTPSASNRADLGGQRKHLSSAFTAPNGYQSRPELMHNRTDGNSMIEFEVQLEELFNEVKMMAMSGRKNDAVELLQANYEAVKEQMESGAIGIEQAAVLDIVALGYITVGDLKFVASVLDILNKVVDSLEDSEPFLDSVLLHMGSMYSTLKKFEKSMSAYKRAIDIIEKKSGEDSTFLITPILGMAKVLGIIGRTAKAVEFYHRAISLLESTRGFENEDLVIPLFGLGNLMLKEGKGKDAETCFARIVDIYKKLYGEKDGKVGMAMYSLANAKCARGEADEAVTLYRRALHIIKDSNDMALDDSVMEKMRIELAELLHVVGRGSEGREILEECLLINERSKGKEHPSSVKHLVNLAASYSRSKNYAEAERLLRIGLDIMIKAVGPDDQSITVPMLNLAVTLYNLKQDDNAEQLALEVLRIRESAFGKDSLPVGEALDCLVSIQSRLGKDENELLKLLKRILRIQEREFGHDGKEVIDTLKKIVFYMEKLGMKDEKFLLQKRLSMLRMKFKNQMQY 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 356602 361371 + ClG42_01g0003800.10 Clacu01g0038 239422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0038 576 Coils Coil 211 231 - -
Clacu01g0038 576 Gene3D Tetratricopeptide repeat domain 198 368 IPR011990 GO:0005515(InterPro)
Clacu01g0038 576 ProSiteProfiles TPR repeat profile. 198 231 IPR019734 GO:0005515(InterPro)
Clacu01g0038 576 Pfam Tetratricopeptide repeat 287 353 - -
Clacu01g0038 576 Pfam Tetratricopeptide repeat 370 439 - -
Clacu01g0038 576 SMART tpr_5 410 443 IPR019734 GO:0005515(InterPro)
Clacu01g0038 576 SMART tpr_5 240 273 IPR019734 GO:0005515(InterPro)
Clacu01g0038 576 SMART tpr_5 198 231 IPR019734 GO:0005515(InterPro)
Clacu01g0038 576 SMART tpr_5 452 485 IPR019734 GO:0005515(InterPro)
Clacu01g0038 576 SMART tpr_5 282 315 IPR019734 GO:0005515(InterPro)
Clacu01g0038 576 SMART tpr_5 324 357 IPR019734 GO:0005515(InterPro)
Clacu01g0038 576 SUPERFAMILY TPR-like 200 439 IPR011990 GO:0005515(InterPro)
Clacu01g0038 576 Gene3D Tetratricopeptide repeat domain 369 575 IPR011990 GO:0005515(InterPro)
Clacu01g0038 576 Pfam Tetratricopeptide repeat 200 229 IPR019734 GO:0005515(InterPro)
Clacu01g0038 576 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 179 559 IPR051787 GO:0009507(PANTHER)|GO:0009658(PANTHER)
Clacu01g0038 576 Pfam Tetratricopeptide repeat 455 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0038 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34