Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0039 ATGGCTGCAGCAGAAGCAAAGCCTCCACGAAAGCATTTGGGAAACCACTTCCCTGACCAAGATGATGGCTACAGAGATTCAAAATTATTGTCAACTCCATCGTTTTCCTCAAATTCAGAACGCAATGCATCTGATCACAGAGCACATGAGATTAGTTCTCCAACCAAAGCTGCTCATATCCCAACATCTTATCAAACAGTTGACTGTGAATTGAAATCAGATCAGCAACCTGATTTTCATCACCATACGGGTTTTGCAGTAGGATTGGCAAACACTTTGCAGGCTGGAGTGGATAATTCAAGTGTCCGGATTGCAAGTAAGACAACTGCATCTGGTGAGGAACATCGAAACATAGAAGAACTTGATCATCGAGTTTGCAAGGGATATGTTGCCACTGAGGCTGTGAGTAATAATCAATCGGTAAACATGACTAAGAAAACAGATTGCATGGATGAGTTCGACTACATAGAGGATCATTTTACAGACTTGCACAATTTTGACGGTCAGATCTCCAAGCAAGAAGAGAAGGTCCCTTTTGATCTGGAGTCGCATTGGACAAAAATTGAGAAGACTAAGCCATGGTGGCGTTCTGCTAGTAAAGATGAGTTGGCTTCCTTGGTTGCCCGGAAGTCTCTTGAAAACTTGGAAAATTGTGACCTTCCTCAACCACGAACCAAACACCAGGGCAAGGATGAGTCTACCTGTCTTGAGTGTTCTGATCAAGATTGCTTTCTCCATTCACCGTTTACTGAGATGCAATTCTCCAGTTTGGATGGATATAACAGGGGAATGCACCCTTCAGGTGGCATGGGTGAGAGACAGTTCATTGTTAGTAGTGTAGGTCACTCGCTGCGTCATCAAGATCATTTCAGCATTAGCAGAAGTGGCAATGAAGAAAACAACTCATGTAGTATTTCATATCTTAATTCTACTAGCAAAGCACAATTGTTGGAAGCGCTATGCCATTCACAAACTCGAGCAAGGGAGGCTGAGAAAGCCGCACAAGAAGCAGATACAGAGAAGAAGCACATTGTCTCACTCTTTCTCAGACAAGCCACCCAACTTTTTGCTTATAAGCAGTGGTTCCAGTTGCTGCAGTTACAGAACATTTGCCTTCAACTTAGGAACAAAGATCAGCCAACCACTGGTCTATTCTCAGATGTCTTGCCTTGGGTCCCTTGTAAAGACAGGCAATTCAATCAACCTAGAAACAGAAGGAAGAAAAGGGACCGAGACCATCGTGAATTTACAATGTATGACATTGCTTTCGCTGTGGGGTTGGGTCTTGCTGGTGCCAGTTTGCTCCTCGGCTGGACAACGGGATTGGCCGGAACCCACGATTCATGGGGCCCCCAAATCAAAGGGCTTACAGGGACCGATGTGCCTAATGACGACGGCGATCGGAATGCCGCCCATGTCGGCGAGGAACCCACCTTCGAAGATGATGGTGGTATCGAGGTTTGTGCATTTGATAATCGGGGAATGGGTCGGAGCTCCATCCCCACCAAAAAATCTGAATATACAACAAAGATAATGGCCAAGGATGCCATTGCCTTATTGGACCATTTGGGGTGGGAAAAGGCTCATATTTTTGGTCATTCCATGGGAGGTATGATAGCTTGCAAATTAGCAGCTATGGCACCCGAAAGAGTCAAGTCACTGGCCATGCTCAATGTAACTGGCGGAGGTTTTCAATGTTGCCCCAAGCTTGACAGGCAAACTTTCGACATTGCAGTTAGATTCTTAAAGGCCAAGACTCCTGAACAAAGGGCTAGTGTTGATTTAGATACCCACTATTCTAAGGAATATCTTGAGGAGTATGTTGGATTTGAAAAAAGAAGAGCAGTTTTATATCGGGAATATGTTAAAGGTATATCAGCAACAGGAATGCAGTCTAATGATGGCTTTGTGGGTCAAGTCAATGCATGCTGGATGCATAAAGTGACAAGAAAAGAGATCGAATGCCTTCAGTCTGCTGGATTTCTTGTATCAGTCATTCATGGCAGGCACGATGTTATTGCTCAGATGTACTATGCAAGAAGACTTGCAGAGAAGCTGTATCCTGTTGCTAGAATGGTAGATCTCCATGGAGGTCATCTAGTCAGTCAAGAGAGAACTGAAGAGGTAAATCAAGCTCTTCTTGACTTAATCAGAGCCTCAGAAACAAAGATGAGTCCACATGACTGGACAAACTTGCCAAAGAAAAGCTCATGGTGGATGAAGGAGAGAATGGCTTTTGTAACACTGAAGACTGAAGGAGGAAGCAGTATCTCCTCCAAACCTTTCTTGTTAGAGAGATTCCATCTTTTCTTCTTGTATATCTTTGGTCTGATTCTTTTGGTGTTCGAGTATCTCCGGAACACCCTCAAAAGCTTGAAACCGGTCCGAAGTCTGTTTCATTTTTGCTATCTGATGGGCAATTGCTCCAATCATCAAAGTGAAGTTGGGGAATGA 2454 44.09 MAAAEAKPPRKHLGNHFPDQDDGYRDSKLLSTPSFSSNSERNASDHRAHEISSPTKAAHIPTSYQTVDCELKSDQQPDFHHHTGFAVGLANTLQAGVDNSSVRIASKTTASGEEHRNIEELDHRVCKGYVATEAVSNNQSVNMTKKTDCMDEFDYIEDHFTDLHNFDGQISKQEEKVPFDLESHWTKIEKTKPWWRSASKDELASLVARKSLENLENCDLPQPRTKHQGKDESTCLECSDQDCFLHSPFTEMQFSSLDGYNRGMHPSGGMGERQFIVSSVGHSLRHQDHFSISRSGNEENNSCSISYLNSTSKAQLLEALCHSQTRAREAEKAAQEADTEKKHIVSLFLRQATQLFAYKQWFQLLQLQNICLQLRNKDQPTTGLFSDVLPWVPCKDRQFNQPRNRRKKRDRDHREFTMYDIAFAVGLGLAGASLLLGWTTGLAGTHDSWGPQIKGLTGTDVPNDDGDRNAAHVGEEPTFEDDGGIEVCAFDNRGMGRSSIPTKKSEYTTKIMAKDAIALLDHLGWEKAHIFGHSMGGMIACKLAAMAPERVKSLAMLNVTGGGFQCCPKLDRQTFDIAVRFLKAKTPEQRASVDLDTHYSKEYLEEYVGFEKRRAVLYREYVKGISATGMQSNDGFVGQVNACWMHKVTRKEIECLQSAGFLVSVIHGRHDVIAQMYYARRLAEKLYPVARMVDLHGGHLVSQERTEEVNQALLDLIRASETKMSPHDWTNLPKKSSWWMKERMAFVTLKTEGGSSISSKPFLLERFHLFFLYIFGLILLVFEYLRNTLKSLKPVRSLFHFCYLMGNCSNHQSEVGE 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 365437 372967 + ClG42_01g0003900.10 Clacu01g0039 239423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0039 817 PRINTS Alpha/beta hydrolase fold signature 544 557 IPR000073 -
Clacu01g0039 817 PRINTS Alpha/beta hydrolase fold signature 484 499 IPR000073 -
Clacu01g0039 817 PRINTS Alpha/beta hydrolase fold signature 530 543 IPR000073 -
Clacu01g0039 817 Pfam alpha/beta hydrolase fold 478 701 IPR000073 -
Clacu01g0039 817 MobiDBLite consensus disorder prediction 27 41 - -
Clacu01g0039 817 MobiDBLite consensus disorder prediction 1 59 - -
Clacu01g0039 817 Gene3D alpha/beta hydrolase 434 725 IPR029058 -
Clacu01g0039 817 PRINTS Epoxide hydrolase signature 484 499 IPR000639 GO:0003824(InterPro)
Clacu01g0039 817 PRINTS Epoxide hydrolase signature 694 716 IPR000639 GO:0003824(InterPro)
Clacu01g0039 817 PRINTS Epoxide hydrolase signature 530 543 IPR000639 GO:0003824(InterPro)
Clacu01g0039 817 PRINTS Epoxide hydrolase signature 544 557 IPR000639 GO:0003824(InterPro)
Clacu01g0039 817 MobiDBLite consensus disorder prediction 9 26 - -
Clacu01g0039 817 PANTHER EXPRESSED PROTEIN 1 441 - -
Clacu01g0039 817 SUPERFAMILY alpha/beta-Hydrolases 439 715 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0039 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0039 Clacu-Chr1:365437 Clacu05g0080 Clacu-Chr5:961740 6.70E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1029 . Blo15g00085 . . . Bpe07g01018 . . . . Cma02g01122 Cma15g01024 Car02g00931 Car15g00957 . Cpe05g00597 . . . . . . . . Cla01g00038 Cam01g0037 Cec01g0036 Cco01g0038 Clacu01g0039 Cmu01g0037 Cre09g2470 Cone1ag0993 . Cone14ag0005 Cone15ag0008 . Csa05g00046 Chy09g01442 . . . Bda06g00788 . . . . Bma12g01206 . Cmo02g01150 Cmo15g01087 . . . . . Cpe13g00318 Bhi12g00645 . . Lac11g0162 . . Lcy12g0138 . . . . . . . Lsi09g00018 . . Cme09g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002285 1 4 2 1 1 2 3 2 2 1 1 1 1 2 2 3 2 2 3 1 2 2 1 2 2 1 2 6 6 2 63