Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0042 ATGCCAATGCCAATGCCAATATGCCATTTACCAATAACCAATTTAAGGACCTCACAAGTGGGAGCGAAGATTAAAGTGCTAGAAACGAAAGCTATCAATGAAGGTTTAAAAGCTCTTCGTTTTCGATTTGAGATTGTCATTCCGCCGCTTTTTGTGGAATCTAATTTTGCTGAAGCGTTCGCGTCCCTTTACAAGATTGATAGTGACCTCTCGGATAATAAATCTGTTGCTTGTTGTGTTCTAAAGCTAACTGAAGATTTTGAGAACATCTACTTTGCTAAGTATTCAAGGTCTACGAAGCCAGGAGGTGGAGGCCGGAGGCCGGAGCGTGGAGGAACACACAACAACAACAACAACAACAAGAACACTCCTTTCTCTTGTTCTTCCATTCCTCATTCACATATCAAACCTCAATTTCTCAATTCTCATCTCATCCCATCACCCGGCCATCTGGCTATTCGGATACCGACCTCCCCTGCCCAAGATTCTTCGCAGTATATGCAAGTCGATCAGAACGACAAGTCTTTAGCTGTGAGGAATGATACGCAGAATGGGAGCTTCCCACATGCCGAATACATCTTCAACTACTCCAAGAAACTTGAAGAGGATCTACAGACGTTTGGAATGAAAATAAAGCAGCATGAGGACAACATTAAATTTCTCAAGACTCAGAAAAACAAATTAGATGAATCCATCCTCGACTTGCAAGTTATTCTAGGAAAGTATCATTCTTCTGGCACACCTGTGGCCGAAAACGAGGTTCATTCCCATCCTCAAAATGATGAGGAAACGATGGAACAGATTATGCGCCAGGAGAAGTCTGCTGCTAGCATTATATGTAAATTGAGCACACATCATGGTATTCAGGCTTACAACCTCATGTTGACCAAGGATGTATTGGGTATTGTTGCTCGGCTTGGAAAAGTTGATGATGATAATCTTAGCAGATTGCTCTCTGAGTACTTGGGAATGGAAACTATGCTGGCAATTGTCTGTAGAACATACGAGGGTGTTAAGGTGCTAGAAACATATGACAGGGAAGGTTGCATAAACAAAAGTCTTGGCCTTCATGGTCTTGGTGCTTCAATTGGGAGGAACTTGGATGGCCGACCATATGCTGGTGACTTTATTGCCAATGACCCACAAAGGAGGCTTGACCTTCTAAAGCCAAGATTACCTAACGGGGAGTGTCCACCTGGCTTTCTTGGCTTTGCTGTTAACATGATCAATATTGATAGCACACACTTGTTTTGTCTCGCAGCCAATGGATATGGTCTCAGGGAGACCCTGTTCTATTCTCTCTTTTCTCGTCTTCAAGTATATAAAACCAGAGCAGACATGCTACAAGCTCTCCCTTGCATTAGTGATGGTGCACTTTCTTTAGATGGAGGAATGATTAAAGCCACTGGTGTTTTTCTCTTGGGCAATCAGGAAGATGTTCAGTTGAGATTCCCAAAGGCCTCAATGAAATCAAGCCTACCTGAAAATTATATTGAATCTGAGAGGCAGATTAAAGAACTCAAGTGGAAAAAGGAAAAGATGGTTGAAGATATAAGGAGAGAACAATCATTACTGGACAATACTAAGCTCAATTTTGACAGGAAAAAGGCAGAGTTTCTAAAGTTCCTGACTGAAAGCTCATCATATGCAGCTCAGCAACAACTCTCAGCCAAGCCAGAGAGGTTGACACCACGATGA 1698 42.4 MPMPMPICHLPITNLRTSQVGAKIKVLETKAINEGLKALRFRFEIVIPPLFVESNFAEAFASLYKIDSDLSDNKSVACCVLKLTEDFENIYFAKYSRSTKPGGGGRRPERGGTHNNNNNNKNTPFSCSSIPHSHIKPQFLNSHLIPSPGHLAIRIPTSPAQDSSQYMQVDQNDKSLAVRNDTQNGSFPHAEYIFNYSKKLEEDLQTFGMKIKQHEDNIKFLKTQKNKLDESILDLQVILGKYHSSGTPVAENEVHSHPQNDEETMEQIMRQEKSAASIICKLSTHHGIQAYNLMLTKDVLGIVARLGKVDDDNLSRLLSEYLGMETMLAIVCRTYEGVKVLETYDREGCINKSLGLHGLGASIGRNLDGRPYAGDFIANDPQRRLDLLKPRLPNGECPPGFLGFAVNMINIDSTHLFCLAANGYGLRETLFYSLFSRLQVYKTRADMLQALPCISDGALSLDGGMIKATGVFLLGNQEDVQLRFPKASMKSSLPENYIESERQIKELKWKKEKMVEDIRREQSLLDNTKLNFDRKKAEFLKFLTESSSYAAQQQLSAKPERLTPR 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 382062 389504 + ClG42_01g0004200.10 Clacu01g0042 239426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0042 565 MobiDBLite consensus disorder prediction 98 127 - -
Clacu01g0042 565 MobiDBLite consensus disorder prediction 151 170 - -
Clacu01g0042 565 Coils Coil 197 231 - -
Clacu01g0042 565 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 161 556 - -
Clacu01g0042 565 Coils Coil 497 517 - -
Clacu01g0042 565 MobiDBLite consensus disorder prediction 111 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0042 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1467 Clacu-Chr10:27816286 Clacu01g0042 Clacu-Chr1:382062 5.60E-06 dispersed
Clacu02g0825 Clacu-Chr2:9520841 Clacu01g0042 Clacu-Chr1:382062 2.50E-13 transposed
Clacu02g1907 Clacu-Chr2:32616557 Clacu01g0042 Clacu-Chr1:382062 8.40E-20 transposed
Clacu02g2177 Clacu-Chr2:34918010 Clacu01g0042 Clacu-Chr1:382062 5.70E-20 transposed
Clacu01g0042 Clacu-Chr1:382062 Clacu05g1056 Clacu-Chr5:9461707 1.50E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1039 . . . Bda07g01934 Bpe03g00190 . . . . . . . Car02g00928 . Sed01g3490 Cpe05g00599 . Bhi01g01492 Tan01g0092 Cmetu06g0095 Lac11g0158 Hepe07g0059 Mch10g0057 . Cla01g00042 Cam01g0040 Cec01g0039 Cco01g0041 Clacu01g0042 Cmu01g0040 Cre09g2467 . Cone5ag0690 . . . Csa05g00048 Chy09g01439 . . Blo09g00026 . . . . . . . Cmo02g01147 . Cma16g00044 . . . . Cpe13g00317 . . . . . . . . . . . . . . Lsi09g00021 Csa03g01983 Chy06g01198 Cme09g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001858 1 3 1 0 1 2 3 2 2 3 2 2 1 2 2 2 2 2 3 2 3 2 2 2 2 2 2 11 3 1 68