Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0044 ATGATCAACAACAACTACAACAAGCTTCACTCCTCCCGCTCCCTCGACTCTACTCCCGCCACCTCCTTCCACCTTTCCCCCAATGATCCTCCGCCACCTCCACCCTCCTCCTCCCTCCGCCGCCGCTCTCGTATCCTTATCATCTCCTTCCTCTCCGTCCTCCTCATCGCTGCCTCCGTGGTCTCCGCCGCCATGCTCGTCCGGTCCCATATCGCATCGAGCCAACCCAATTTCCCTCACAACAAGCCGTCCCAAGCCATCTCCCGAGCCTGCAGCCACACTCTGTACCCATCTCTCTGCCTCTCTTCTCTTCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGTCCATGACCTTGTTCACATCTCTCTCAACTTAACTCTTCAACATCTCACCAAAGCTCTTTATTCCACTTCTCAAATCCCCATCTCCCAAATCTCCAACGACCCTTTAGCCCATTCCGCTTATGAAGACTGCATGGAGCTTCTAAACGACGCCGTTGACGCTTTTTCCCTCTCTCTCTTTTCCACTGAAGCTTCTAATCACGACGTCATGACGTGGCTTAGTGCGGCATTGACTTATCATGACACGTGTACGGATGGATTTGCGGATGTGGCTGACTTGGCAGTTAAGGATCAGGTGGAGGCGAAGTTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGTGGTGGGGATTTGCCGGTGGAGAATAGGCGCCGCCGCCGGTTGATGGAGAGTGGTACACAGCCGTGGGCGGCGGAGAATGGTGGTGATGGGGGTTTTCCACAGTGGGTGAGTGGGAAGGATCGGAGGCTTTTGGCTACTCCTATTTCGGCGATTCAGGCGGATATTGTGGTGGCTAAGGATGGTTCTGGCAAATTCAAGACGGTGGCTGAGGCCATTGACGCGGCTCCGTCGTCGAGTGGCCGCCGGATTGTTATCTACATTAAGGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTAGGAGATGGAAAGGGCATAACGGTCATTTCAGGTGGCAAAAGTATCTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCGGGAACAGGAATAATTTTAAGAGACATGACGTTTGAGAACACGGCAGGAGCAAGCAAGCACCAAGCAGTGGCATTGCGCTTGAGCGCTGACCACGCTGTGGTATACCGTTGCAACATCATTGGTTATCAAGACACTCTCTATGTGCACTCAAACCGCCAATTCTTTCGAGAATGCGACATCTACGGTACGGTGGACTTCATCTTTGGGAATGCGGTAGTTGTGTTCCAAAGTTGCAACATCTATGCTCGAAAGCCAATGGCGGGGCAAAAGAACACCATCACTGCCCAAGACCGGAAGGACCCAAACCAAAACACTGGAATCTCCATCCATGCTTGTAAGATCATTGCCACTAGCGACCTCGAAGCCTCCAAGGGTTCTTTCCCCACCTACCTAGGTCGTCCTTGGAAATTATACTCTAGAGTGGTGTACATGGTATCTTCCATGGGCGACCATATTCACCCACGTGGTTGGCTGGAGTGGCAAGGTTCTTTTGCTCTCGACACTCTTTACTACGGCGAGTATATGAATTCTGGGCCAGGTGCCGCTGTGGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTTATAACTTCCACGGTAGAAGCCTCCAAATTTACTGTTGGACAATTCATTTATGGCTCTTCTTGGTTGCCCTCCACTGGAGTCTCCTTTTCAGCTGGATTATCCGCTAACTAA 1815 51.63 MINNNYNKLHSSRSLDSTPATSFHLSPNDPPPPPPSSSLRRRSRILIISFLSVLLIAASVVSAAMLVRSHIASSQPNFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGSLSADVHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAHSAYEDCMELLNDAVDAFSLSLFSTEASNHDVMTWLSAALTYHDTCTDGFADVADLAVKDQVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRRRRRLMESGTQPWAAENGGDGGFPQWVSGKDRRLLATPISAIQADIVVAKDGSGKFKTVAEAIDAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSIFDKVTTFRTATFAGSGTGIILRDMTFENTAGASKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIIATSDLEASKGSFPTYLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSAN 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 402410 407877 - ClG42_01g0004400.10 Clacu01g0044 239428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0044 604 Gene3D - 283 601 IPR012334 -
Clacu01g0044 604 MobiDBLite consensus disorder prediction 1 39 - -
Clacu01g0044 604 MobiDBLite consensus disorder prediction 1 24 - -
Clacu01g0044 604 NCBIfam pectinesterase inhibitor domain 59 232 IPR006501 GO:0004857(InterPro)
Clacu01g0044 604 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Clacu01g0044 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 234 IPR035513 -
Clacu01g0044 604 Pfam Plant invertase/pectin methylesterase inhibitor 86 230 IPR006501 GO:0004857(InterPro)
Clacu01g0044 604 PANTHER PECTINESTERASE 44 592 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu01g0044 604 CDD PMEI-like_3 90 236 - -
Clacu01g0044 604 SUPERFAMILY Pectin lyase-like 284 600 IPR011050 -
Clacu01g0044 604 SMART PMEI_2 82 230 IPR006501 GO:0004857(InterPro)
Clacu01g0044 604 Pfam Pectinesterase 289 586 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu01g0044 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 232 IPR035513 -
Clacu01g0044 604 FunFam Pectinesterase 283 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0044 Clacu-Chr1:402410 Clacu09g0555 Clacu-Chr9:4738639 7.00E-138 dispersed
Clacu10g0004 Clacu-Chr10:445953 Clacu01g0044 Clacu-Chr1:402410 1.40E-120 transposed
Clacu01g0044 Clacu-Chr1:402410 Clacu05g1051 Clacu-Chr5:9395563 9.30E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0044 - - - 0.0