Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0052 ATGATAATTATCATGACTTATCTGCAGGAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGACAACACTTTAAATGCTGGAAAGATTGGGACAAGAGCCGACTTAGTTTCAGAGAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAGTCATCTTCTTTCAATAAATTTATGTCCAGAGGTCTTGGAACTGGAAAAAAAGTGCTTGACCCACAGGGTCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGACGATAAGAAATGTCTTGGGTTGGATCAGAAGATGGAGATTACAGCTAGTGTGTTACGTTCATTCACTGATATATTTTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATCGCCCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATCTCTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAGTTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATCAGAATCTATCCATTATATAGAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCGTTCTGGTACTTGTTCTCTATAGAACGAGAAACTACATGTTGGCGGAGGGCTTGTCATAATCGTACTGGCTGTGTTTCTAATTCACTATATTGTGATGTCAGTCCAGGAGACAACTCATTTTTAAATATTTCATGTCCTCTAGTTGATGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTGAATCTGGTGTTGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCATTTACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCTATTTCTGGCTTGGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTGCTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAGCAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGATTCAAAATCTTCCAAAAGATCTCAGAAGGGATATTAAACGCCATCTTTGCTTGTCTTTGCTAATGAGGGTACCCATGTTTGAAAAAATGGATGAACAATTGTTGGATGCAATGTGTGACCGTCTCAAGCCAGTACTATACACGGAGGAAAGTTTCATTGTTAGGGAAGGAGACCCGGTAGACGAGATGATTTTTATTATGCGAGGCAAGTTATTGTCTGTAACTACGAATGGGGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCAGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACACTCCTCATCCAATCTTCCAATTTCGACGAGAACTGTTCGAACACTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCTGATGACTTAAAGTTTGTAGCCTCACAGTTCCGAAGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCGCAGCAATGGAGAACATGGGCAGCATGTTTTATTCAAGCAGCATGGCGTCGATACCGCAGAAAGAAGCATGAGCAGACCCTCTTGGAAGAAGAGAACAGGTTAAAGGATGCATTGGCCAAGACAGGTGGGAGTTCTCCAAGTTTAGGTGCCACCATCTATGCATCCAGATTTGCAGCAAACATCCTTAGAACGATTCGACGGACAAGCTCACGGAAGGCCAGGATTCCAGAGAGAATACCACCGATGTTGCTTCAGAAACCAGCAGAACCTGATTTTACCTCTGAAGAGAATAGTTGA 2148 41.57 MIIIMTYLQEKIVRFQDWSSDKTSRGLYSADNTLNAGKIGTRADLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSRGLGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDQKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIVIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYREVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWRRACHNRTGCVSNSLYCDVSPGDNSFLNISCPLVDDNPPFDFGIFLDALESGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSIYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLIQNLPKDLRRDIKRHLCLSLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESFIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 477478 483754 - ClG42_01g0005200.10 Clacu01g0052 239436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0052 715 Coils Coil 637 657 - -
Clacu01g0052 715 ProSiteProfiles cAMP/cGMP binding motif profile. 485 569 IPR000595 -
Clacu01g0052 715 Pfam Ion transport protein 100 412 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0052 715 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Clacu01g0052 715 Gene3D Helix hairpin bin 411 476 - -
Clacu01g0052 715 Gene3D - 100 409 - -
Clacu01g0052 715 Gene3D Jelly Rolls 483 603 IPR014710 -
Clacu01g0052 715 SUPERFAMILY Voltage-gated potassium channels 89 407 - -
Clacu01g0052 715 Pfam Cyclic nucleotide-binding domain 506 597 IPR000595 -
Clacu01g0052 715 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Clacu01g0052 715 SUPERFAMILY cAMP-binding domain-like 414 607 IPR018490 -
Clacu01g0052 715 CDD CAP_ED 485 616 IPR000595 -
Clacu01g0052 715 SMART cnmp_10 485 616 IPR000595 -
Clacu01g0052 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 703 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0052 Clacu-Chr1:477478 Clacu02g2179 Clacu-Chr2:34961923 1.60E-186 dispersed
Clacu02g1489 Clacu-Chr2:28358284 Clacu01g0052 Clacu-Chr1:477478 1.00E-207 transposed
Clacu04g1332 Clacu-Chr4:27163495 Clacu01g0052 Clacu-Chr1:477478 2.70E-106 transposed
Clacu10g1459 Clacu-Chr10:27746792 Clacu01g0052 Clacu-Chr1:477478 5.00E-209 transposed
Clacu01g0052 Clacu-Chr1:477478 Clacu05g0096 Clacu-Chr5:1060650 2.10E-189 wgd
Clacu01g0052 Clacu-Chr1:477478 Clacu05g1036 Clacu-Chr5:9178249 2.60E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0052 K05391 - csv:101221781 1366.67