Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g0066 | ATGAGCTTCAAAAGGGACCTCAAGCTTGTCGTCTTCGTTTTCTTGGCAGTCTTCTGGTTTGCAGCGACTTTTTATCCGGTCATGTCAGAGCCAATCCAAGACAAGGAAGCTTTGCTTAATTTTATCAACAAGATGGATCACTCACACTCACTCAATTGGAAGAAGAGCACTTCTTTATGCAAAGAGTGGAAGGGAGTTCAATGCAACAATGCTGGATCCCAAGTTGTAGCTTTGCGATTGGCTGAAGTTGGCTTACACGGTTCGATCCCAATCAACACTCTTGGTCGACTATCAGGACTTGAAACTCTAAGCCTAGGATCGAATTACATATCAGGGCCTTTCCCTTCTGACTTCCAAAAACTGAGAAATCTCAACTCACTCTACTTGGAAAACAACAAGTTTTCTGGTCCATTGCCATTGGATTTCTCAGTATGGAAGAATCTCAACATCATTGATTTGTCCAACAATGCCTTCAATGGGTGCATCCCTAGCTCAATTTCAAACACGACACATTTAACGACATTAAACCTTGCCAATAACTCACTCTCTGGTAAGATTCCAGACCTCCACCTTCCTAATTTGCAGGAGTTGGATCTTTCAAACAACCATCTCACAGGGAATGTCCCTCAGTCCCTTCAAAGATTTCCGAGTCGGGCATTCTTCGGTAACAACCTCATCCCTGGAAATGCCATTCCTCCAGTTCGTCCTGGACAATCGCTCAATGCTCAACCATCAAAGAAAAGTACAACAACAATTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAATGGGGCTAGTTATAGCAGTCATTTTGATGGTTATGTGCTGCTCAAACAGAGGAGTAAAAAACAAGGCATCATCAAAACTGGACAAACAAGATCTGTTTGTAAAGAAAAGGGGATCTGATACACAAAGCAACAACCTCAAGTTCTTTCAGAGTCAGAGCCTTGAGTTTGACTTGGAGGACTTGTTGAGGGCATCTTCTGAGGTGCTTGGGAAGGGGACGTCCGGGACGACGTATAAGGCGACTTTAGAAGATGGTAATGCTGTGGCAGTGAAGAGGTTGAAGGAAGTGAGTGTTTCAAAGAAAGAATTTGAGCAGCAAATGGATGTGCTTGGGAGCGTTGAACATGAAAATGTGTGTGGTTTAAGGGCTTATTATTATTCAAAGGATGAGAAACTCATGGTCTTTGACTTTTACCAACATGGAAGTGTCTCAGCAATGTTGCATGTTGCGAGAGAGAAAGGGCAATCTCCTCTAGACTGGGAAACTCGACTCCGAATCGCCATTGGCGCCGCCAGAGGAATCGCTCGCATTCACTCAGAAAACTGCGGCAAACTCCTTGTCCATGGAAACATCAAGGCCTCAAACGTCTTCCTCAACTCCGACGGCTACGGTTGCGTCGCAGACGCCGGCGTCGCTGCTCTGATGAACCTCATGGTCCCGCCAGCCACCAGATCCGCTGGATACCGTGCTCCCGAACTCAAGGACTCTCGCAAAGCATCTCAAGCCTCTGATACTTACAGCTTCGGCGTCGTGCTTCTCGAGCTCCTCACCGGAAAATTTCCACTGCATACGAAGGGAGGCAACAGCGGAGGCGGCGGCGATCAGATTATCCACCTAGTGCGTTGGGTGAACGCGGTGGTCCGCGAGGAGTGGACGGCAGAGGTGTTTGATGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAGATTGCGCTATCTTGTGTAGGAAGGGTTCCGGATGATCGGCCGGCAATGGCGGATGTTGCGGCTCGTTTGGAGGGAGTTCGTCGGGTGAGCGGCGTAGGAAGCCTACCGCCGTCGCCGTCGCCGCCGCCGCCGTTGGAACGTGGAGCGGGGGATTTGGTTCAGATTCAGGTGAATGTGGCTGAGGGTGACGGTGACGGTGGAGCTCCGTCGAGATCGATTTGA | 1965 | 48.5 | MSFKRDLKLVVFVFLAVFWFAATFYPVMSEPIQDKEALLNFINKMDHSHSLNWKKSTSLCKEWKGVQCNNAGSQVVALRLAEVGLHGSIPINTLGRLSGLETLSLGSNYISGPFPSDFQKLRNLNSLYLENNKFSGPLPLDFSVWKNLNIIDLSNNAFNGCIPSSISNTTHLTTLNLANNSLSGKIPDLHLPNLQELDLSNNHLTGNVPQSLQRFPSRAFFGNNLIPGNAIPPVRPGQSLNAQPSKKSTTTIGEAAILGIIIGGSAMGLVIAVILMVMCCSNRGVKNKASSKLDKQDLFVKKRGSDTQSNNLKFFQSQSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSVSKKEFEQQMDVLGSVEHENVCGLRAYYYSKDEKLMVFDFYQHGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIARIHSENCGKLLVHGNIKASNVFLNSDGYGCVADAGVAALMNLMVPPATRSAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKGGNSGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMADVAARLEGVRRVSGVGSLPPSPSPPPPLERGAGDLVQIQVNVAEGDGDGGAPSRSI | 654 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 593546 | 595954 | - | ClG42_01g0006600.10 | Clacu01g0066 | 239450 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g0066 | 654 | Pfam | Leucine Rich repeats (2 copies) | 170 | 205 | IPR025875 | - | |
Clacu01g0066 | 654 | PRINTS | Leucine-rich repeat signature | 172 | 185 | - | - | |
Clacu01g0066 | 654 | PRINTS | Leucine-rich repeat signature | 191 | 204 | - | - | |
Clacu01g0066 | 654 | ProSiteProfiles | Protein kinase domain profile. | 329 | 607 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g0066 | 654 | Pfam | Leucine rich repeat N-terminal domain | 33 | 69 | IPR013210 | - | |
Clacu01g0066 | 654 | Pfam | Protein kinase domain | 332 | 598 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g0066 | 654 | FunFam | pollen receptor-like kinase 1 | 299 | 403 | - | - | |
Clacu01g0066 | 654 | PANTHER | OS05G0588300 PROTEIN | 11 | 614 | IPR050994 | - | |
Clacu01g0066 | 654 | ProSitePatterns | Protein kinases ATP-binding region signature. | 335 | 357 | IPR017441 | GO:0005524(InterPro) | |
Clacu01g0066 | 654 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 404 | 614 | - | - | |
Clacu01g0066 | 654 | Gene3D | Transferase(Phosphotransferase) domain 1 | 405 | 612 | - | - | |
Clacu01g0066 | 654 | Pfam | Leucine Rich Repeat | 147 | 168 | IPR001611 | GO:0005515(InterPro) | |
Clacu01g0066 | 654 | SUPERFAMILY | Protein kinase-like (PK-like) | 333 | 621 | IPR011009 | - | |
Clacu01g0066 | 654 | Pfam | Leucine rich repeat | 88 | 134 | IPR001611 | GO:0005515(InterPro) | |
Clacu01g0066 | 654 | ProSiteProfiles | Leucine-rich repeat profile. | 171 | 192 | IPR001611 | GO:0005515(InterPro) | |
Clacu01g0066 | 654 | Gene3D | Ribonuclease Inhibitor | 33 | 143 | IPR032675 | - | |
Clacu01g0066 | 654 | FunFam | Probable inactive receptor kinase RLK902 | 31 | 190 | - | - | |
Clacu01g0066 | 654 | Gene3D | Phosphorylase Kinase; domain 1 | 295 | 403 | - | - | |
Clacu01g0066 | 654 | SUPERFAMILY | L domain-like | 40 | 215 | - | - | |
Clacu01g0066 | 654 | Gene3D | Ribonuclease Inhibitor | 144 | 229 | IPR032675 | - | |
Clacu01g0066 | 654 | MobiDBLite | consensus disorder prediction | 611 | 631 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0066 | Clacu-Chr1:593546 | Clacu01g0206 | Clacu-Chr1:2017868 | 1.10E-152 | dispersed | |
Clacu01g0066 | Clacu-Chr1:593546 | Clacu05g1017 | Clacu-Chr5:8995384 | 1.60E-156 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73212 | PF00069 | Pkinase | 1.30E-30 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g0066 | - | - | - | 0.0 |