Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0075 ATGGAGATAGACGGGCTATGTGTTATCTGCGCTGGTCTTGGAATCGTCGAAGAGGATGACTACGGCAATCGGATCGGTTACTCCAAAACCGAGTTCTGTTTAGATAATTTGAAGGATTTGTTAAGGTTCTTGAGGCGAGATGACCCGCAGACTCGCGATGTTTTTAAGCAAGTTTGTAAATGGAACGTTGTGGGTAAAGATCTGATACCCATTATTGAATACTGTCAAGATGATCGTAATGCAGTCTTAAATGCAGTGAAGATTTTGGTGTTCCTTACAATGCCTATTGAACCCACGTCTAGTGACATCGCACAACAGATCGAATATTTATGGGGTTTGAAGTCTTTAATCACATGCAGTAATGTTGTTGCCATAATTGTTTCACTTTTGGAGAGTCCACTGGAAAATCTGGATTGTGGAACATTCTCAGAAGATGACTGGAAATTGGCGCAGCTGGTTATAACACTCTTCCGAAATGTTTTGGCTATTCAAGAAATCTCATTGCAGCAAAAGGCTGATGGATCAGCTTGTCAGTTAATATTGCTGAGAGACAAATTTCTGGAGGTCTTATTCCGGGAGAATGTTATGGACATAATATTGGTGATGACACAACACATTGACGGTTCTTGCAGCCATCTCCGTCAAGACAAATTAGTCTTTCTGGAAATATTTTATTACATATTTATGGGCCAAGAGCCAGAGTTAATTGCAAAAGTACCTCAAAACTGCAGTGAGGAAAATGTAGAAGCTGAAGTGGTATCTTCTGTCAATAGTCTGAAGTCTATGATGGAGGAAGATAGAAGAAAGTTTACTAGATTACACAATATCAACCGCCATTCTCAGTTTAGTGGAACTTTTACTCGGCATACCTTGGATGGTTCAAAGTTAGTACTCAAAGGAAAACCATCTTTGACTTCTTGTACCAGCCTTAGACCACCTAAAGTTTGTAGAGGTCCAGTTAAAAAAATTGCATGGGACCATGGACCATTAACTTCGAAAAACAGCAAACTTCTGCAGTTACTTCATGATTTTATCAACCAGTTTCTTTCAGGCGGCTACAATGCTCTGATGCAGTTGGTGCATGAAGATATTGAAAAGGAACATCATTCCATCCAGAACAACGATGTGGTTGTATTTTTTCAGGTCGCACAGTTTGCTATTTCTTTTCAGTATCACAAGTTCTCAACTTCAAAGATAATTGAATCTGACACTGGTGAGGCTCAAACGGAACATGTTGATTCCACATTTTTCCAAGGCAACATGTGCGGTCCAATAGCAGCAACAATGAACGAGGCAATGTTTCAGCTAGTTGTTACAAAATGGCGTTATGCATTTGAAGGCTTAAAGGAAACTAATGACTTTAAGTTTCTTTCTGCAGCTGGCTCTCTGATGAAAAATATGATTTGCATGCTAGATTTGGTGCTAAAATTATTGCCAGAAGATTCAAAGGAGCCTCAAACAGCTCGTATTCTACTTTACAAATTATTTTATGATCAGACAGATCAAGGGATGACTCAATTCCTCTTAAATTTGCTTAAGTCATTCAACACTCACAAACAACCCAGAAGTGATCTTGCAGATTTAGTTGAGATGATCTACAAAGTCATACAGCTTATGGAGAACCTCCAAGCACGTGGAACACTTCGGGTTTCCAAAAAATCAAGGAGGGGAAGAAAGGCAAAGGCAGCAAATAATGAGGGCAACAAACAGTCAGAAGATCAGGGAGCTGAGAATAAGATGGCCATAACCCATAATGAACAATCAACAGATGTCGATGTTGGTGAAAATGGTAACTTGAAAATGAGTGCTGATGGTAAAGAAGAGATTTCTATTACTGCTAAGGCCGATGAACCTGAAATGCTAGACTTAAACACGGGAACTTTTGAAGGCAGTCTATCACAGAGAGAGGACAAAAAATTGAATGATGGTTATAGCACAGCCGACTCTTCTAGTGATGAACAGCAAAATAGAATTGTGGAGGTTGATCTTAAAGTATCAAGTCTAGTATCTACTTTTGCCAACAACAACATTATTCAGAAAATATGCTGGTTGCTTAAGTTTTACAAGAGCAATGCTACTAGTACAAACCATTACATAATATGCATTTTACGGAGGATCACTGAGGATTTGGAGCTTTCTCCAATGCTGTACCAGTTATCTGTCCTTCCCACATTTTATGATATTCTATCTGAACAGAAGTCAAGTCCATGCAAGGAATATGCTACTATAGTTGATTTCCTGACAAGTCTGGTGAGAAAGATGCTAAGGAAGATAAAGAATCAGCCACTCCTTTTTGTTGAAATTCTGTTTTGGAAGACCCGGAAAGAATGCCATTACATTGACGCTGAGTACTTAGTGCATGAGCTTGGCTGTTGGAAGAAAGAAAGTAGGGAGGGAAATTTTACTGATGGTGATGAAAATGGCTCGTTGATGGGCAAGCATTGGACTCCCAGAAGCATAGCAGATGCACTTGGTGAAGATGAAGCTGATGTTGTGATCACCACTAACGAGTTTGGATTTCATACTGAAGCAAAGTCTGACAAAGTCACGGGAGGCCTTGAGTCTACCACCTTGGATGATGAGATAGACGGGATAAAACACAATGAAAATGAGCTGTCTATGGATGATAAATCCAAAAGGCTTCCTAAAAGAAAGAGACTTGTTCTTGATGCTGAACTGGAGACTAAAATTAAAGATCTTTTTGAGAAATTCAAGGAGGACAGGAACTGTAGCAAACTTATCGCGGAGAATCTTGATAATGACGTCAAAGTTTCGCCTGCCCAGGTTTCCAATAAGCTTAGACAGATGGGTTTGAAAGTTTCTCAAAGAAAGAAGAGGCAGTATGCTGATGAAGCCTCTTCTGCTGAAAATCTTGAAGGCGAAAGCAATGTGGAAGAAAGGAATAGTCCACTTAACTCAAATGTTTTTGGGAAAAGTTCATTGAATCAACCGTCGCTCACTCGAAAAAGAGTTCTTGCTTTTGATAAAGAACACGAAGAGAAGATTAGAGCTTTATATGAGCAGTTTAAGGACCATAAGAGATGTAGTTCTATGATTGCAAATGCGCTGGATGCTGATAACAAATTCACTCCTGCCCAAGTTTCCCGAAAGCTCAAGCAATTGGGTTTGTATATTTCTCGTAAGAGAAGGTCGAGTGATGGGGATCACAATGATTCTGTTATTGATAAGGAATCTGAAATTGATGATGAAACATTGCTCTCATTAATAAATAGGAAAAAAGGGAAGCATCTTCAAAAGTCAACTGAAACGTCCAGTTCCATCTCAACACAGAGCATATTAATTGATGAGGAATCTGAAGATGTAGCTGTTGGAAGGTCCATGCAAATGGAGGATAGCAACCTAGCCAGTAGCTTGGAGCCTATGGAGGTTGGTAAAGCGCCTTCAGATGATGTTGACTTGAATGACTTTACGGAAAGTCAAGGTAAGAATGCTGAAGCTGGTGTCATGCCACGACTAGAAGAAAGTTTAGGATTGTTGATCTTGAGGATGAAGAATGAGATGGGAATGGCCAGGTTGATGACTTTAGCCACAATGGCTTGA 3561 39.71 MEIDGLCVICAGLGIVEEDDYGNRIGYSKTEFCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNVVGKDLIPIIEYCQDDRNAVLNAVKILVFLTMPIEPTSSDIAQQIEYLWGLKSLITCSNVVAIIVSLLESPLENLDCGTFSEDDWKLAQLVITLFRNVLAIQEISLQQKADGSACQLILLRDKFLEVLFRENVMDIILVMTQHIDGSCSHLRQDKLVFLEIFYYIFMGQEPELIAKVPQNCSEENVEAEVVSSVNSLKSMMEEDRRKFTRLHNINRHSQFSGTFTRHTLDGSKLVLKGKPSLTSCTSLRPPKVCRGPVKKIAWDHGPLTSKNSKLLQLLHDFINQFLSGGYNALMQLVHEDIEKEHHSIQNNDVVVFFQVAQFAISFQYHKFSTSKIIESDTGEAQTEHVDSTFFQGNMCGPIAATMNEAMFQLVVTKWRYAFEGLKETNDFKFLSAAGSLMKNMICMLDLVLKLLPEDSKEPQTARILLYKLFYDQTDQGMTQFLLNLLKSFNTHKQPRSDLADLVEMIYKVIQLMENLQARGTLRVSKKSRRGRKAKAANNEGNKQSEDQGAENKMAITHNEQSTDVDVGENGNLKMSADGKEEISITAKADEPEMLDLNTGTFEGSLSQREDKKLNDGYSTADSSSDEQQNRIVEVDLKVSSLVSTFANNNIIQKICWLLKFYKSNATSTNHYIICILRRITEDLELSPMLYQLSVLPTFYDILSEQKSSPCKEYATIVDFLTSLVRKMLRKIKNQPLLFVEILFWKTRKECHYIDAEYLVHELGCWKKESREGNFTDGDENGSLMGKHWTPRSIADALGEDEADVVITTNEFGFHTEAKSDKVTGGLESTTLDDEIDGIKHNENELSMDDKSKRLPKRKRLVLDAELETKIKDLFEKFKEDRNCSKLIAENLDNDVKVSPAQVSNKLRQMGLKVSQRKKRQYADEASSAENLEGESNVEERNSPLNSNVFGKSSLNQPSLTRKRVLAFDKEHEEKIRALYEQFKDHKRCSSMIANALDADNKFTPAQVSRKLKQLGLYISRKRRSSDGDHNDSVIDKESEIDDETLLSLINRKKGKHLQKSTETSSSISTQSILIDEESEDVAVGRSMQMEDSNLASSLEPMEVGKAPSDDVDLNDFTESQGKNAEAGVMPRLEESLGLLILRMKNEMGMARLMTLATMA 1186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 648173 656459 + ClG42_01g0007500.10 Clacu01g0075 239459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0075 1186 MobiDBLite consensus disorder prediction 548 605 - -
Clacu01g0075 1186 MobiDBLite consensus disorder prediction 632 653 - -
Clacu01g0075 1186 Pfam Timeless protein 27 287 IPR006906 -
Clacu01g0075 1186 MobiDBLite consensus disorder prediction 937 980 - -
Clacu01g0075 1186 MobiDBLite consensus disorder prediction 567 595 - -
Clacu01g0075 1186 MobiDBLite consensus disorder prediction 956 980 - -
Clacu01g0075 1186 PANTHER TIMEOUT/TIMELESS-2 4 1113 IPR044998 GO:0000076(PANTHER)|GO:0003677(PANTHER)|GO:0006281(PANTHER)|GO:0031298(PANTHER)|GO:0043111(PANTHER)|GO:0048478(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0075 K10997 - - csv:101218315 2029.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g830 . Blo15g00103 . . . Bpe07g01002 . . . . . . . . . . . . . . . . . . Cla01g00074 Cam01g0074 . Cco01g0075 Clacu01g0075 Cmu01g0076 Cre09g2433 . . . . . Csa05g00086 . . . . Bda06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00056 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011825 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 30