Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0088 ATGGCGGCCGGAAACGACGATTGGGATCTTTCCGCCGTCGTCCGGAGCTGCAATTCAGCAGTTTCCGCTACTGATTCAACTGCTGCCGCCGAATCCGCCTTGTCTTGTCTCGCTTCTTTAACGTTCGAGGACGATCCAAACGACGTCGCATTCTCCTTTTCCGACATACTTCAACCTAAACAGCCCAACGGCTTCCATGAGTTACACCAAGCCTTCCTCTCCTTTCTCCCCAACCACTCCGCCGCCGCCGCCGTGGTCTCCGCTCCACCCGCTGCCGTGCCGGAAGTCCCCAACTCAACCCCGAACCGCCATTTCCGACAGGGAATTAAACCCATTCGGCCGAACCCACATCCCGTGGCGCTGCAGCAGCAACAACACCACCTCCGGCAACCACCGTTTCCGCCGGACTTCCCTAGTTCGGCAATGACGCAAACTCTCATACCCAAATCGAGAAAAAGGCAAAAGAGAACTGTATGCCATGTTACAGCAGATAATCTCTCAACGGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGAGCTAGAAAACAAGTTGAACGGAGTAACGCCGATCCCGAAACTTTCATCATCACATACACTGGAGATCACACTCATCCCCGTCCAACTCACCGGAATTCCCTCGCCGGAAGTTCCCGGAACAGGTCCTCCTCCTCCGTCCCCACCCGACACCCTGCCACGGCAGGCCCCGATCCCTCGCTCACCGCCACCGCTCTCGTTGCCTCTTCCTCTTCCCCAGCAGCTTCTCCGATCACACCGTTGAACGATGACGATGGTGGAGGCGGCGAGAAAGACACGGAGATGTTCGAAGATATGACCATCGATAGTGACGACGATGACGAAGATGACGATATTCTGATTCCAAACTTGACAGTGAGAGATGAAATCTTCGTTGGCTTTGAGGAGCTTGGAAGGCGGGGGCCATTGTAA 1008 54.56 MAAGNDDWDLSAVVRSCNSAVSATDSTAAAESALSCLASLTFEDDPNDVAFSFSDILQPKQPNGFHELHQAFLSFLPNHSAAAAVVSAPPAAVPEVPNSTPNRHFRQGIKPIRPNPHPVALQQQQHHLRQPPFPPDFPSSAMTQTLIPKSRKRQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNADPETFIITYTGDHTHPRPTHRNSLAGSSRNRSSSSVPTRHPATAGPDPSLTATALVASSSSPAASPITPLNDDDGGGGEKDTEMFEDMTIDSDDDDEDDDILIPNLTVRDEIFVGFEELGRRGPL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 792167 793757 - ClG42_01g0008800.10 Clacu01g0088 239472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0088 335 MobiDBLite consensus disorder prediction 218 308 - -
Clacu01g0088 335 Pfam WRKY DNA -binding domain 169 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0088 335 Gene3D WRKY domain 150 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0088 335 FunFam WRKY transcription factor 22 150 221 - -
Clacu01g0088 335 MobiDBLite consensus disorder prediction 262 277 - -
Clacu01g0088 335 SMART WRKY_cls 167 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0088 335 MobiDBLite consensus disorder prediction 230 250 - -
Clacu01g0088 335 SUPERFAMILY WRKY DNA-binding domain 162 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0088 335 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 310 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu01g0088 335 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0088 Clacu-Chr1:792167 Clacu01g2621 Clacu-Chr1:36359525 2.20E-32 dispersed
Clacu01g0088 Clacu-Chr1:792167 Clacu05g0150 Clacu-Chr5:1412043 9.20E-39 wgd
Clacu01g0088 Clacu-Chr1:792167 Clacu07g0780 Clacu-Chr7:19791952 8.90E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g787 . . . Bda07g01904 . . . . . . Cma02g01084 Cma15g01067 Car02g00825 Car15g00988 . Cpe05g00637 . . . . . . . . Cla01g00089 Cam01g0090 Cec01g0090 Cco01g0091 Clacu01g0088 Cmu01g0090 Cre09g2417 . . . . . Csa05g00101 . . . Blo09g00055 . . . . . . . . Cmo15g01124 . . . . . Cpe13g00277 Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . Lsi09g00076 . . Cme09g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009671 2 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46928 PF03106 WRKY 5.80E-26 CL0274 Clacu TF