Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0094 ATGGTTATGGATTCAAATGGTTTTGTGGACGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGAATTACGGAAGCGGCTCTCATTAAACTGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGGCCAAAGCGTGGAGAGCCACGAGGATTTGCCTTCATCGAATACAGCTCCAAGGAGGAAGCTAAACTGGCTAAAGAGAAGATGCATGGAAAATTGGCTTGCGGTCGTCCGTTGGTCGTCCGCCTTGCTAGTGAAAAGTTCATGACCAACACAACAAATGATACTTCAAAAGCAGCAGGCGAGTCAAGTAAATCGAGACTCGGTGGCAGCAATTATGGACAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGTGTGAAAAAACAGAAGCAAGATAATATCAGTTGCCAGAGATAA 492 44.31 MVMDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNTTNDTSKAAGESSKSRLGGSNYGQLTRSDKIAAIKNKLRALEGGGESSSVKKQKQDNISCQR 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 856899 859561 + ClG42_01g0009400.10 Clacu01g0094 239478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0094 163 SMART rrm1_1 16 92 IPR000504 GO:0003723(InterPro)
Clacu01g0094 163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723(InterPro)
Clacu01g0094 163 Pfam RNA recognition motif 17 89 IPR000504 GO:0003723(InterPro)
Clacu01g0094 163 SUPERFAMILY RNA-binding domain, RBD 11 100 IPR035979 GO:0003676(InterPro)
Clacu01g0094 163 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 98 - GO:0003723(PANTHER)
Clacu01g0094 163 CDD RRM_RBM18 16 95 IPR039157 -
Clacu01g0094 163 Gene3D - 12 109 IPR012677 -
Clacu01g0094 163 MobiDBLite consensus disorder prediction 143 163 - -
Clacu01g0094 163 MobiDBLite consensus disorder prediction 149 163 - -
Clacu01g0094 163 MobiDBLite consensus disorder prediction 101 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0094 K24527 - - csv:101215222 297.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0094 Clacu-Chr1:856899 Clacu07g1491 Clacu-Chr7:29510700 1.30E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g748 . Blo15g00177 . . . Bpe07g00927 . . . . Cma02g01078 . Car02g00821 . . Cpe05g00641 . . . . . . . . Cla01g00094 Cam01g0096 Cec01g0096 Cco01g0097 Clacu01g0094 Cmu01g0096 Cre09g2411 . . Cone14ag0061 Cone15ag0064 . Csa05g00109 Chy09g01386 . . . Bda06g00694 . . . . Bma12g01110 . Cmo02g01095 . . . . . . . Bhi12g00787 . . . . . . . . . . . . . Lsi09g00082 . . Cme09g01931
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007148 1 7 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 37