Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g0112 | ATGCCGGAATCGGATAGTGGAACGCCGGTAGCATCGGCGCCGGCGACGCCGGGGACGCCGGGAGGGCCGCTGTTTTCCGGCCTCCGAGTGGATTCTCTATCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCAACCTCACACGTGCTTTACTGACTTCCCTGCTCCTGATGTCTCTCTCACCCGCAAGCTGGGAGCAGAATTTGTGGGAACATTCATCTTGATATTTGCTGCGACGGCAGGGCCCATTGTCAACCAAAAGTACAACGGCGTCGAGACTCTGATCGGCAACGCCGCGTGCGCCGGCCTGGCGGTGATGATCGTAATTCTGTCAACGGGACACATTTCCGGCGCCCATCTGAACCCGTCGCTCACCATTGCTTTTGCGGCCCTCCGCCACTTCCCTTGGGTTCAAGTTCCGGCCTACATCGCCGCCCAGGTCTCTGCCTCCATTTGCGCCTCCTTCGCTCTCAAAGGTGTTTTCCACCCCTTCATGTCCGGTGGCGTCACCGTCCCCTCTGTCAGCACTGGCCAAGCCTTCGCTCTTGAATTTATCATCACTTTCAATCTCTTGTTTGTCGTCACTGCGGTCGCCACTGATACTCGCGCGGTTGGAGAGTTGGCTGGAATTGCAGTCGGAGCTACAGTGATGCTTAACATTCTTGTCGCTGGGCCCTCAAGCGGTGGTTCGATGAACCCAGTTCGAACTTTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTGGTGGCGCCGACGCTAGGGGCAATACTCGGTGCCGGAACTTACACTGCCGTTAAGCTGAGAGACGACGAAGTGGATGCTCCGTCGCAGGTAAGGAGCTTCCGGCGTTGA | 897 | 58.08 | MPESDSGTPVASAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAILGAGTYTAVKLRDDEVDAPSQVRSFRR | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1030165 | 1035086 | + | ClG42_01g0011200.10 | Clacu01g0112 | 239496 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g0112 | 298 | SUPERFAMILY | Aquaporin-like | 69 | 286 | IPR023271 | - | |
Clacu01g0112 | 298 | PANTHER | AQUAPORIN NIP2-1 | 68 | 284 | IPR034294 | - | |
Clacu01g0112 | 298 | FunFam | Aquaporin NIP2-1 | 60 | 292 | - | - | |
Clacu01g0112 | 298 | Pfam | Major intrinsic protein | 68 | 277 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu01g0112 | 298 | Gene3D | Glycerol uptake facilitator protein. | 64 | 292 | IPR023271 | - | |
Clacu01g0112 | 298 | PRINTS | Major intrinsic protein family signature | 260 | 280 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu01g0112 | 298 | PRINTS | Major intrinsic protein family signature | 192 | 210 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu01g0112 | 298 | PRINTS | Major intrinsic protein family signature | 111 | 135 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu01g0112 | 298 | PRINTS | Major intrinsic protein family signature | 148 | 167 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu01g0112 | 298 | PRINTS | Major intrinsic protein family signature | 223 | 245 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu01g0112 | 298 | PRINTS | Major intrinsic protein family signature | 72 | 91 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu01g0112 | 298 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Clacu01g0112 | 298 | ProSitePatterns | MIP family signature. | 129 | 137 | IPR022357 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0112 | Clacu-Chr1:1030165 | Clacu07g1210 | Clacu-Chr7:26980733 | 1.10E-88 | dispersed | |
Clacu01g0112 | Clacu-Chr1:1030165 | Clacu01g0113 | Clacu-Chr1:1038271 | 7.00E-107 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g0112 | K09874 | - | csv:101212651 | 564.688 |