Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0112 ATGCCGGAATCGGATAGTGGAACGCCGGTAGCATCGGCGCCGGCGACGCCGGGGACGCCGGGAGGGCCGCTGTTTTCCGGCCTCCGAGTGGATTCTCTATCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCAACCTCACACGTGCTTTACTGACTTCCCTGCTCCTGATGTCTCTCTCACCCGCAAGCTGGGAGCAGAATTTGTGGGAACATTCATCTTGATATTTGCTGCGACGGCAGGGCCCATTGTCAACCAAAAGTACAACGGCGTCGAGACTCTGATCGGCAACGCCGCGTGCGCCGGCCTGGCGGTGATGATCGTAATTCTGTCAACGGGACACATTTCCGGCGCCCATCTGAACCCGTCGCTCACCATTGCTTTTGCGGCCCTCCGCCACTTCCCTTGGGTTCAAGTTCCGGCCTACATCGCCGCCCAGGTCTCTGCCTCCATTTGCGCCTCCTTCGCTCTCAAAGGTGTTTTCCACCCCTTCATGTCCGGTGGCGTCACCGTCCCCTCTGTCAGCACTGGCCAAGCCTTCGCTCTTGAATTTATCATCACTTTCAATCTCTTGTTTGTCGTCACTGCGGTCGCCACTGATACTCGCGCGGTTGGAGAGTTGGCTGGAATTGCAGTCGGAGCTACAGTGATGCTTAACATTCTTGTCGCTGGGCCCTCAAGCGGTGGTTCGATGAACCCAGTTCGAACTTTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTGGTGGCGCCGACGCTAGGGGCAATACTCGGTGCCGGAACTTACACTGCCGTTAAGCTGAGAGACGACGAAGTGGATGCTCCGTCGCAGGTAAGGAGCTTCCGGCGTTGA 897 58.08 MPESDSGTPVASAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAILGAGTYTAVKLRDDEVDAPSQVRSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1030165 1035086 + ClG42_01g0011200.10 Clacu01g0112 239496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0112 298 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
Clacu01g0112 298 PANTHER AQUAPORIN NIP2-1 68 284 IPR034294 -
Clacu01g0112 298 FunFam Aquaporin NIP2-1 60 292 - -
Clacu01g0112 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0112 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
Clacu01g0112 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0112 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0112 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0112 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0112 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0112 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0112 298 MobiDBLite consensus disorder prediction 1 25 - -
Clacu01g0112 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0112 Clacu-Chr1:1030165 Clacu07g1210 Clacu-Chr7:26980733 1.10E-88 dispersed
Clacu01g0112 Clacu-Chr1:1030165 Clacu01g0113 Clacu-Chr1:1038271 7.00E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0112 K09874 - csv:101212651 564.688