Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0113 ATGTCGCAATTCGATTGCATACACGTGGACGCCCCAAAACGGAGCCAAACTCTTGATGCCTCTCTCACTCGAAAGGTGGGAGCAGAATTTGTGGGCACATTCATTCTCATATTTGCTGCAACAGCCGCACCCATCGTCAACCAAAAGTACAACTCCGTCATGTCACTTATCGGAAACGCTGCATGCGGCGGCCTAGCGGCAATGGTCGTAATTCTGTCCACGGGACACATATCTGGCGGCCACCTAAACCCGTCACTAACCATCGCCTTGGCCGCCGTCCGCCACTTCCGTTGGGCCCATGTCCCCGCCTACATCATCGCCCAGGTCTCCGCTTCCATCTGCGCCTCCTTCGCTCTTAAAGGCGTTTTTCACCCTTTTATGTCTGGCGGCGTCACCGTCCCCTCCGTTGGCACTGCCCAGGCCTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTCGTCGTCACCGCTCTCTCTACTGATACTCGAGCCGTTGGAGAGTTGGGCGGAATTGCAGTTGGAGCAACGGTGGTGCTCAACATTCTTATCGCTGGGCCATCCACCGGTGGTTCGATGAACCCAGTGAGGACTCTAGGCCCCGCTGTGGCTGCCGGAAATTATAAAGAACTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCGATCGTTGGCGCTGGAACCTACACCGCCGTGAAGCACAAAGATGATGAAATGGATCATGTTCCGCCGTATGTGAGGAGCTTCCGTCGATGA 756 55.03 MSQFDCIHVDAPKRSQTLDASLTRKVGAEFVGTFILIFAATAAPIVNQKYNSVMSLIGNAACGGLAAMVVILSTGHISGGHLNPSLTIALAAVRHFRWAHVPAYIIAQVSASICASFALKGVFHPFMSGGVTVPSVGTAQAFALEFLITFNLLFVVTALSTDTRAVGELGGIAVGATVVLNILIAGPSTGGSMNPVRTLGPAVAAGNYKELWVYMVAPTLGAIVGAGTYTAVKHKDDEMDHVPPYVRSFRR 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1038271 1041821 + ClG42_01g0011300.10 Clacu01g0113 239497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0113 251 PANTHER AQUAPORIN NIP2-1 17 236 IPR034294 -
Clacu01g0113 251 FunFam Aquaporin NIP2-1 14 243 - -
Clacu01g0113 251 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Clacu01g0113 251 Pfam Major intrinsic protein 21 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0113 251 SUPERFAMILY Aquaporin-like 20 238 IPR023271 -
Clacu01g0113 251 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0113 251 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0113 251 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0113 251 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0113 251 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0113 251 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0113 251 Gene3D Glycerol uptake facilitator protein. 5 241 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0113 Clacu-Chr1:1038271 Clacu07g1210 Clacu-Chr7:26980733 9.50E-81 dispersed
Clacu01g0112 Clacu-Chr1:1030165 Clacu01g0113 Clacu-Chr1:1038271 7.00E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0113 K09874 - csv:101212485 424.861