Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0114 ATGGGTTTGCTCAAATTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTCAATTTGAAGAGGGTTTTTTCGCTACAAGGTTTCGCTGGACTGAGATCGAGGCTTTCACTAAGAATTTCTCCGCTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGGATGGCGGCCGCCGTCAAGATTTTGGGCGCTAGTGAGCGGCTCAACCGGATGTTCCGCCAGGAATTGGACATTCTTCTCCAGCTCCGTCACCGGAATATTGTCAATTTCGTTGGGTATTGCGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTCCCAAATGGGAACTTACAAGAGAAGCTCCACAGCCGGGCGGCGGCCACGAAGACGGCGGTTCTTCCATGGAAACTCCGGCTACTCATAGCCTTTCAATTAGCTCAAGCAATCGAATACCTCCATGAGAAATGCAGCTTACAAATCGTTCACGGCGATATAAAATCATCGAACATTTTACTGGACGAACGATTCAATTGCAAATTATGCGATTTCGGGTCAGCAAAAATGGGATTTTCGTCGTCGGTGGGGAATCCATCCTCGTCGCCGTTGCCGTCGAGCCCCTTCAGAGCGAAGCAATTGATGATGGGATCTCCAGGATACACAGATCCCCAATATCTAAGAACCGGAATCGCTTCAAAGAAAAACGATATTTACAGTTTCGGCGTTGTTCTCTTAGAGCTGATCACCGGAAAAGAGGCTTTCTGTTCGGAGAAAGGTCAGATTCTGACATCAATTTTACCTCCGGCGGTTCGCGACGGCGGAGGAATTAAACCGTCGGAAGTGGCGGAACTAGTCGATCCGCGACTCCGGGGCGATTACGACGGCAATGAAGCCGGTTCGTTGATTTCAATTGCGGCGGCGTGCGTGACGCAACCGCCGGCGCCGAGGCCGACGATCGGAGGCGTGCTGCAGATGATGACGGAGAAGATCGGAAATGTTGGCGACGGGGTATGGGCGGTGAAACGTGGCAGTAAATCATTGGATGTGGGGAGATGGTAA 1080 50.65 MGLLKFFRVKRKSKVADKKTVLDAQFEEGFFATRFRWTEIEAFTKNFSALVGSGGFSNVYLARTAPGMAAAVKILGASERLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHSRAAATKTAVLPWKLRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSSVGNPSSSPLPSSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSILPPAVRDGGGIKPSEVAELVDPRLRGDYDGNEAGSLISIAAACVTQPPAPRPTIGGVLQMMTEKIGNVGDGVWAVKRGSKSLDVGRW 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1043148 1044586 - ClG42_01g0011400.10 Clacu01g0114 239498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0114 359 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Clacu01g0114 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g0114 359 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
Clacu01g0114 359 ProSiteProfiles Protein kinase domain profile. 45 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0114 359 PANTHER OS01G0253100 PROTEIN 19 335 - GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g0114 359 SMART serkin_6 45 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0114 359 Gene3D Transferase(Phosphotransferase) domain 1 120 341 - -
Clacu01g0114 359 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524(InterPro)
Clacu01g0114 359 Pfam Protein kinase domain 49 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0114 Clacu-Chr1:1043148 Clacu05g1165 Clacu-Chr5:10719003 9.90E-47 dispersed
Clacu01g0114 Clacu-Chr1:1043148 Clacu05g2516 Clacu-Chr5:33270190 6.60E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73213 PF00069 Pkinase 8.00E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0114 - - - 0.0