Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0121 ATGAGCTCTCAGTATTCCGGTGAAGACTGTCTCGGTTGGGCCGCAACAGACTCCTCTGGCTTTTTATCTCCTTACAAATTCACTCGTAGGGCTCCTAGAGATGATGATGTTTCAATTACAATAACACACTGCGGAATTTGTTATGCAGATGTAATATGGACAAGAAATAAATTAGGAGATTCAAAATATCCTTTGGTGCCTGGACATGAGATTGCAGGAATTGTGAAAAATGTTGGCTCAAATGTTCAACGAATTAAAGTTGGAGATCATGTTGGGGTAGGAACTTACGTGAATTCTTGCAGACAATGCGAGTACTGTGAAGATTGTCAAGAAGTTAGTTGCACAAGTGGATGCACTCATACTTTTAATTCAATTGATTTTGACGGTACAATTACAAAGGGAGGATACTCCAACTACATAGTTGTTCATGAGAGATACTGCTACAAAATACCTGACAATTATCCCTTAGCTTCAGCTGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCTCCCATGATTCGGCATAATATGAATCAACCTGGTAAATCTCTTGGTGTGATTGGGCTTGGTGGTCTTGGCCACTTAGCAGTGAAGTTTGGGAAGGCTTTTGGACTGAATGTGACAGTTTTTAGCACTAGCATATCCAAGAAAGAAGAAGCCCTGAGCGTTCTTGGAGCAGACAAATTTGTTCTCTCATCTGACAACGAGGAAATGAAGGCCTTGTCCAAGTCCCTCGACTTTATTATCGATGCTGCATCTGGTGATCACCCATTTGATACATACATGTCTACATTGAAGATTGGTGGCGTTATGGTTCTGGTGGGGTTTCCTTCTCAAGTCAAGTTTAGTCCTGCTAGCCTTATTTTGGGTATGAGAACCATTTCTGGTAGCGTGACTGGTGGCACCAAAGTGACCCAAGAAATGATCGATTTCTGTGCTACTCATGGAATCTATCCAAACATAGAAGTGATTCCAATTCAGTACTCCAATGAAGCTATCGAAAGGGTAACGAAGAATGATGTCAAGTACCGATTTGTTATAGATATCGAAGGCTCCCTAAAATGA 1068 41.1 MSSQYSGEDCLGWAATDSSGFLSPYKFTRRAPRDDDVSITITHCGICYADVIWTRNKLGDSKYPLVPGHEIAGIVKNVGSNVQRIKVGDHVGVGTYVNSCRQCEYCEDCQEVSCTSGCTHTFNSIDFDGTITKGGYSNYIVVHERYCYKIPDNYPLASAAPLLCAGITVYSPMIRHNMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTVFSTSISKKEEALSVLGADKFVLSSDNEEMKALSKSLDFIIDAASGDHPFDTYMSTLKIGGVMVLVGFPSQVKFSPASLILGMRTISGSVTGGTKVTQEMIDFCATHGIYPNIEVIPIQYSNEAIERVTKNDVKYRFVIDIEGSLK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1160681 1165486 + ClG42_01g0012100.10 Clacu01g0121 239505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0121 355 Gene3D - 165 320 - -
Clacu01g0121 355 SMART PKS_ER_names_mod 14 306 IPR020843 GO:0016491(InterPro)
Clacu01g0121 355 Pfam Zinc-binding dehydrogenase 192 314 IPR013149 -
Clacu01g0121 355 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
Clacu01g0121 355 Pfam Alcohol dehydrogenase GroES-like domain 34 152 IPR013154 -
Clacu01g0121 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Clacu01g0121 355 PANTHER ALDEHYDE REDUCTASE 8 351 IPR047109 GO:0016616(InterPro)|GO:0016616(PANTHER)
Clacu01g0121 355 FunFam Cinnamyl alcohol dehydrogenase 165 320 - -
Clacu01g0121 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Clacu01g0121 355 SUPERFAMILY GroES-like 17 183 IPR011032 -
Clacu01g0121 355 Gene3D - 13 350 - -
Clacu01g0121 355 CDD CAD1 12 349 IPR047109 GO:0016616(InterPro)
Clacu01g0121 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0121 Clacu-Chr1:1160681 Clacu02g0081 Clacu-Chr2:834967 2.80E-102 dispersed
Clacu01g0121 Clacu-Chr1:1160681 Clacu05g1190 Clacu-Chr5:10977744 3.40E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0121 K00083 - csv:101211438 671.774