Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0123 ATGATGGACCCGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGTGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAACAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATTGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCACCACCTCTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGGCCATTAGTCTGGCAGCCACTCGGCGCAACAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAATAACAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGGCAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAACGGTGGAGGTGCTTCAATGGTGATTCTACAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAACAATAATAGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAAGTAA 1083 45.61 MMDPPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTTTSLRPSIVVPSGGATTWGPLVWQPLGATTAGYHHQPAAVTPRDHTHLSQINNNNNNVNGMCCPYGYGSVETTTSGLVYLRTELGGRSRRATPRLGEEEFELEMEGNNNYQMQQEYCSNGGGASMVILQGNCMEDHKLKTTNNNNNNNNSEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYK 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1193179 1194261 + ClG42_01g0012300.10 Clacu01g0123 239507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0123 360 SMART B3_2 34 139 IPR003340 GO:0003677(InterPro)
Clacu01g0123 360 ProSiteProfiles B3 DNA-binding domain profile. 34 139 IPR003340 GO:0003677(InterPro)
Clacu01g0123 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 321 IPR044800 GO:0003700(InterPro)
Clacu01g0123 360 Gene3D - 28 150 IPR015300 -
Clacu01g0123 360 FunFam B3 domain-containing protein 27 148 - -
Clacu01g0123 360 SUPERFAMILY DNA-binding pseudobarrel domain 31 140 IPR015300 -
Clacu01g0123 360 CDD B3_DNA 32 121 IPR003340 GO:0003677(InterPro)
Clacu01g0123 360 MobiDBLite consensus disorder prediction 1 28 - -
Clacu01g0123 360 Pfam B3 DNA binding domain 34 138 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0123 Clacu-Chr1:1193179 Clacu05g2496 Clacu-Chr5:33046443 5.30E-40 dispersed
Clacu06g0233 Clacu-Chr6:2713577 Clacu01g0123 Clacu-Chr1:1193179 9.00E-53 transposed
Clacu01g0123 Clacu-Chr1:1193179 Clacu07g0810 Clacu-Chr7:20536024 3.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46933 PF02362 B3 7.10E-29 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0123 K09287 - csv:101211271 498.819