Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0140 ATGACCGTTCCTGCTTCCGGTTTTATGATGGTAAACGGCGGATCAAGCTGTCTCCCACTCCCCCCAGATGTCGAGAATCAGACCGTCTCCGACCTGGTGAAACAATCCGAGTCTAATTTGAAAGAAGGCAATCTTTACTATGTTGTTTCTAATCGGTGGTATAGAAGATGGCAATTATATGTCGGACTGTCCACTGAAGAATTTTCTAGCAAAGATCATTCCTCTGATTCCCAACACCGTAATATGGTTCCTCCAAACGTGGTTGAAAGACCCGGTCCTATTGATAATTCAGATATAATCGTTAATGGAAGTGATTCTTCTAAGAACAATGATTTAGAGCTAAAAAGTTTTTTGGAGGAACGACGGGATTATGTTTTGGTTCCTAGTGAAGTGTGGGAAAAGCTTTATGATTGGTACAAAGGGGGGCCACCGTTACCAAGAAAGATGATATCTGTAGGTGTCAATCAAAAGAATTTTTCTGTGGAGGTTTATCTACTTTGTCTAAAATTGATTGATGCCAGAGATGCAAGTGAATGCACCATACGGTTGAGCAAGAAGGCCACCATATTTGATCTTCGTGAGAAGGTGTGTGCACTTAAAGGAATAAAGCAAGAAAAGGCATGTATATGGGACTATTTCAACCAGCAGAAACAATTAATATTGGATCCAACAACCCAAACCCTCGAAGAACTAAACTTGCAGATGAATCAATATATCCTCCTTGAAGTTGATGGACCTACTCCTCAGACCGGCATGGATGCCACTCGAAACGAGTTAGCTTTGGTAGCCCTTGAACCTTCAAGGTCAGCTCTTTCAATTGCAGGGGGGCCAGTGATGTCAAATGGGCATTCTTCCGGTTATGGTTACCAGGGAAGTTCTTTAAGCACATCTGTTTCTGACATCGATGATAGAAATGATCTTAGTAATACTGCAAAGAAAAAAGAGAAGGGTGGTTTGGCAGGGCTGCAGAATTTAGGAAATACATGTTTTATGAATAGTGCCCTTCAATGTTTAGTTCACACGCCACCCCTTGTAGAGTATTTTTTACAAGATTATTCTGAAGAGATCAATGCAGAGAATCCTTTGGGAATGCACGGAGAATTAGCCCTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCGGGACAAACCACAATTGCACCACGTGTATTCAAGGGAAAGTTAGCTCGGTTTGCTCCTCAGTTCAGTGGTTATAACCAGCATGATTCCCAAGAACTTCTTGCCTTCTTACTGGATGGACTGCATGAGGATCTGAATCGTGTTAAGCGAAAGCCTTATTTTGAAACAAAGGATTCTGATGGTCGTCCAGATGCAGAAGTTGCAGATGAGTGTTGGAGATACCATAAAGCAAGGAATGACTCTTTAATTGTGGATGTTTGTCAAGGTCAATATAAGTCAACATTGGTTTGTCCAGTTTGTGGAAAAATCTCAATTACTTTTGATCCATTTATGTATTTATCATTGCCGCTACCTTCAACTGTCACTCGCAGTGTGACAGTGACTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATACACTGTGACAGTGCAAAGACATGGTTACACCAAAGATCTCACCAATGTATTGGCTTCTGCATGCTGCTTGAAGAGTGATGAAAATCTTCTGCTCGCAGAGGTTTATGATAACCGTATTTTCCGATATTTGGATAACCCTCTTGAATCTTTGACTTCAATTAAAGATGAAGAGTATCTAGTTGCCTATCGCCTTCCGAAAAGAGAGTCTGGAAGACCAAAGCTGGAGATCATTCACAGATCGCTGGAAAAATGCTCCATGGACCGTGTGAAGGGAATGGAGAGAAAGCTTTTTGGAACTCCTCTAGTCACATATTTGGGGGAAGACTTCCATAGTGGAGCCGACATAAATGCAGCTGTGTCTAAGATCCTATTGCCGCTGAGGAGAACATACCCTTCAACTAAAGCTCATGGTCATGGTAGCAAAGAAAATGGCTTTGTTTCTGAAATGAATGATGAACCAGGCAACTGTGGTCCTCAGTCTGTTTCTAGGAGTCAGTCAATTGACATTGAAGTAGAGGAAGCATCTGAAAAAGAGTCATCCTTTCAGCTTCTTTTAACGGATGATAAGGGTTTGAGCTGCAAGCCAATTGACAAGGATTCTACTATAAAATATGGTCCGCTTATAAAGGTTTTCTTAGATTGGAACGACAGAGAACATGAATTATATGATGTGAGCTACATTAAGGATCTTCCTCCTGTTCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAATCTCTTTGTTTTCTTGTTTGGAAGCATTCCTGACTGAAGAACCTTTAGGTCCTGATGATATGTGGTACTGCCCCAGGTGCAAGGAGCATAGACAGGCTACAAAGAAGTTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAGCGTTTTTCATATAGCAGATTCCTTAAAAACAAACTTGATACCTTTGTTGATTTCCCCATTCACAATCTTGATTTGAGTAAATATGTCAAAAGCAATGATGGAAAATCTTACTTATACAACCTATATGCCATTAGCAACCATTATGGTGGTCTTGGTGGTGGGCACTACACTGCATACGCAAAGTTAATCGATGAGAAGAGATGGTACCACTTTGATGACAGCCACGTTTCCTCTGTTGGCGAAGAAGAGATCAAGACCTCAGCTGCTTATTTGTTGTTTTATCAAAGACTTCATTCCAGCGGCTACAAGGAAGCTTAG 2772 41.27 MTVPASGFMMVNGGSSCLPLPPDVENQTVSDLVKQSESNLKEGNLYYVVSNRWYRRWQLYVGLSTEEFSSKDHSSDSQHRNMVPPNVVERPGPIDNSDIIVNGSDSSKNNDLELKSFLEERRDYVLVPSEVWEKLYDWYKGGPPLPRKMISVGVNQKNFSVEVYLLCLKLIDARDASECTIRLSKKATIFDLREKVCALKGIKQEKACIWDYFNQQKQLILDPTTQTLEELNLQMNQYILLEVDGPTPQTGMDATRNELALVALEPSRSALSIAGGPVMSNGHSSGYGYQGSSLSTSVSDIDDRNDLSNTAKKKEKGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINAENPLGMHGELALAFGELLRKLWSGQTTIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDAEVADECWRYHKARNDSLIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTVTVQRHGYTKDLTNVLASACCLKSDENLLLAEVYDNRIFRYLDNPLESLTSIKDEEYLVAYRLPKRESGRPKLEIIHRSLEKCSMDRVKGMERKLFGTPLVTYLGEDFHSGADINAAVSKILLPLRRTYPSTKAHGHGSKENGFVSEMNDEPGNCGPQSVSRSQSIDIEVEEASEKESSFQLLLTDDKGLSCKPIDKDSTIKYGPLIKVFLDWNDREHELYDVSYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRFLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSHVSSVGEEEIKTSAAYLLFYQRLHSSGYKEA 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1358680 1366397 - ClG42_01g0014000.10 Clacu01g0140 239524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0140 923 ProSiteProfiles DUSP domain profile. 20 150 IPR006615 GO:0004843(InterPro)
Clacu01g0140 923 SMART dusp 39 153 IPR006615 GO:0004843(InterPro)
Clacu01g0140 923 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 91 914 IPR050185 -
Clacu01g0140 923 CDD Peptidase_C19R 760 913 - -
Clacu01g0140 923 Gene3D Cysteine proteinases 673 920 - -
Clacu01g0140 923 SUPERFAMILY DUSP-like 18 150 IPR035927 -
Clacu01g0140 923 Pfam DUSP domain 44 150 IPR006615 GO:0004843(InterPro)
Clacu01g0140 923 Pfam Ubiquitin carboxyl-terminal hydrolase 320 912 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Clacu01g0140 923 Gene3D - 10 163 IPR035927 -
Clacu01g0140 923 SUPERFAMILY Cysteine proteinases 318 914 IPR038765 -
Clacu01g0140 923 MobiDBLite consensus disorder prediction 70 102 - -
Clacu01g0140 923 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843(InterPro)
Clacu01g0140 923 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 857 874 IPR018200 GO:0004843(InterPro)
Clacu01g0140 923 Gene3D Cysteine proteinases 303 513 - -
Clacu01g0140 923 Gene3D - 164 248 - -
Clacu01g0140 923 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 915 IPR028889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0140 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0140 Clacu-Chr1:1358680 Clacu03g0240 Clacu-Chr3:2811088 1.20E-232 dispersed
Clacu01g0140 Clacu-Chr1:1358680 Clacu02g2302 Clacu-Chr2:36078612 4.60E-189 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40