Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0156 ATGAGTTGCGGTTCGGATTTGATGATGTCTGGGAATCCAGAGGCTGATGATCGTGAGATTGTTGAGAAGGATCCATCTGGACGATATATACGGTATGATGAGATTTTGGGTAAAGGGGCATTCAAGACAGTATACAAAGCATTCGATGAAGTTGGTGGAATCGAAGTTGCTTGGAGTCAAGTGGACATTGAAGATGTTTTGCAGTCACCAGAACAACTTCAAAGATTGTATTCTGAAGTCCATCTGTTGAAGTCACTGAAACATGAAAATATCATCAAGTTCTATAGCTATTGGGTTGATGATAAGCATAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCATAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGAGGTTTAACATATTTACATGGTCATGACCCTCCAATCATTCACAGGGATTTGAAATGTGATAATATATTCGTCAATGGGAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCGATTGTGATGCAGCAGCCTACTGCTCGAAGTGTAATTGGCACTCCAGAGTTCATGGCTCCAGAACTTTATGATGAAGACTACAATGAACTTATTGACATATATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCGGGTATAAAGCCTGCTTCCCTCGAGAAAGTGCTGGACCCTCAAGTTAAGCAATTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGATTACCTGCAAGTGAACTCTTGAAAGATCCTTTCCTTGCAACTGAAAGTCCCAAGGAGCATAGTTCTGAACTTTCAAGGTTATTGAATGAGCAGTTCAAATCTGTAGATCCTCCACTGCTTGGTTCTCATCCAATGGACACAGACCCTAACTCCAGCAAACTCTCAGGCTCAGTGGCCTCATCTGTCAAAAGCAATAATGGAATTTCTCACTTTACAACTCTAGAACTGAAGAGGCTCACTGAGAACAATGAATTGACACTGAAAGGGGACATGACTGATCATAATACAATGTCATTCTATTTGCGTATTGCTGAATTATATGGTAAATCTAGGAATATCCATTTTGCCTTCTATCTCGACTCTGATACTTCTATGGCAATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCGACAATCATAGCAAAACTAATTGATGAATTAATTGCCAAGTTTGTTCCTAGCTGGAAACCATGTCCAAACTATTGTGAAGAACAAAATACCCCACATAGTTCTTCTGAAACTCAAGAGGATAAGACCTTCATTCCTCCTTTTTTCTCTGAGCTAGTACTGTCATCTCCCATGGTGGCTGCTGCTGCAAGGAATAATCCAACGGATTTGACCAAGGTTGAAGATCAAGAAAACAAGCAGTCGATTATTTCGTGTGCTTCTGTGGAATACATTTACTCAACTGTCTCAGATTACAGCATAGGAAAAGGATCAGAATGTGGTGAGTTTGGCCACCCTGAATGTGACAAAGCTTATATTAGCAGTGGAACAATTGATTTAGATGCAGAAGCTGTTGGATCTATTCCGACGATGATCGATTTTGCAAAACCATCTCTAATCTCCTCCTGCTCTGGAATGTCCAAAGAATTGAGTTTATCTAGCTTTTCCACTCTTTCTCTGGAAGAAAGAGATCACCAAGATGAACTCAAGATGGAGATTGATGCTATTGACTTGCAATACCACCAATGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGCTACTGCTATTTGA 1902 40.12 MSCGSDLMMSGNPEADDREIVEKDPSGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYSYWVDDKHKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHGHDPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELIDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATESPKEHSSELSRLLNEQFKSVDPPLLGSHPMDTDPNSSKLSGSVASSVKSNNGISHFTTLELKRLTENNELTLKGDMTDHNTMSFYLRIAELYGKSRNIHFAFYLDSDTSMAIALEMVEQLELSNEDATIIAKLIDELIAKFVPSWKPCPNYCEEQNTPHSSSETQEDKTFIPPFFSELVLSSPMVAAAARNNPTDLTKVEDQENKQSIISCASVEYIYSTVSDYSIGKGSECGEFGHPECDKAYISSGTIDLDAEAVGSIPTMIDFAKPSLISSCSGMSKELSLSSFSTLSLEERDHQDELKMEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKATAI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1588393 1591187 - ClG42_01g0015600.10 Clacu01g0156 239540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0156 633 Gene3D Phosphorylase Kinase; domain 1 14 111 - -
Clacu01g0156 633 SMART serkin_6 30 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0156 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g0156 633 ProSiteProfiles Protein kinase domain profile. 30 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0156 633 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 16 460 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Clacu01g0156 633 Gene3D Transferase(Phosphotransferase) domain 1 113 294 - -
Clacu01g0156 633 FunFam Probable serine/threonine-protein kinase WNK1 15 111 - -
Clacu01g0156 633 MobiDBLite consensus disorder prediction 313 336 - -
Clacu01g0156 633 FunFam probable serine/threonine-protein kinase WNK9 113 292 - -
Clacu01g0156 633 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 429 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Clacu01g0156 633 Pfam Protein kinase domain 33 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0156 633 CDD STKc_WNK 28 287 - -
Clacu01g0156 633 MobiDBLite consensus disorder prediction 320 336 - -
Clacu01g0156 633 Gene3D - 370 470 - -
Clacu01g0156 633 SUPERFAMILY Protein kinase-like (PK-like) 32 288 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0156 Clacu-Chr1:1588393 Clacu05g0067 Clacu-Chr5:875198 9.80E-175 dispersed
Clacu01g0156 Clacu-Chr1:1588393 Clacu03g0309 Clacu-Chr3:3611049 4.60E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73214 PF00069 Pkinase 1.70E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0156 K08867 - csv:101207748 1152.89