Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0161 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGCCCAAAACCAAGTGTTTCAATTTTAGAGAGGAAGATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAATTATAGCCTTACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGCTCCTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAAAGACCTTCTTCTTCATCATCATCTACATCTCCCACACCTTCTTCATCTCAACCTATTCCCAAGAAAATTCTTGATCTCCCTCAAAACCCTAAATCCACCCAAGATCTCAACTTGTTCTTCCCACCCTCGAACCATCAAGATCATCATCATTTCATCACCAATAGCCACCCCGAAATCGTTGCCCCTGCGATTGCCAGTTCCTCATCAGCCTCTACTGTTGCGACGGCGGCGGTGTCGTCGTCGCCTTCGGCCCCATCGCATCATCATCCGCTTTCGGCAATGGAGCTTCTCGCCGGGATGGCGAACAACAACAACAACAATTCTAGGGGTTTGAATTGTTTCTTTCCAATGTCGTCTGTTGTTGTCCCTGATCCAGCTGGCTCCCTTTACACGGTAGGGTTTCCCGATCTCCATGATCAGTTCAAGTCAAACCTCGGATTATTCTCTCTTGATGGCTACAGCGTTGTCCCGACCGAGGGAAGCAAGGGTGGGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGGAGTTGAACAAGGCAAAGAGCAAGGAGAGCATAATTCAAGTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 912 45.83 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSSTSPTPSSSQPIPKKILDLPQNPKSTQDLNLFFPPSNHQDHHHFITNSHPEIVAPAIASSSSASTVATAAVSSSPSAPSHHHPLSAMELLAGMANNNNNNSRGLNCFFPMSSVVVPDPAGSLYTVGFPDLHDQFKSNLGLFSLDGYSVVPTEGSKGGGRLMQLPFEDLKQGSNGGVEQGKEQGEHNSSGYWNGMLGGGSW 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1613349 1614796 - ClG42_01g0016100.10 Clacu01g0161 239545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0161 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 179 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0161 303 MobiDBLite consensus disorder prediction 94 134 - -
Clacu01g0161 303 MobiDBLite consensus disorder prediction 84 134 - -
Clacu01g0161 303 MobiDBLite consensus disorder prediction 272 303 - -
Clacu01g0161 303 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g0161 303 MobiDBLite consensus disorder prediction 278 297 - -
Clacu01g0161 303 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g0161 303 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0161 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0161 Clacu-Chr1:1613349 Clacu02g2141 Clacu-Chr2:34595191 2.30E-33 dispersed
Clacu01g0161 Clacu-Chr1:1613349 Clacu01g0028 Clacu-Chr1:271276 2.10E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu03g0770 . 17 179 C2C2-Dof Transcription Factor Family AT1G29160 58.0 7.7e-45 177.2
Clacu01g2452 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.5e-40 160.6
Clacu01g0161 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 4.2e-42 169.1
Clacu03g0770 . 17 179 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.4e-43 172.2
Clacu10g2073 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Clacu09g2023 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.0e-38 156.8
Clacu03g0162 . 68 142 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.0e-37 152.1
Clacu01g0161 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 2.6e-44 176.4
Clacu10g1511 . 145 524 C2C2-Dof Transcription Factor Family AT5G39660 53.7 2.7e-81 299.7
Clacu10g2073 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 67.3 1.3e-39 161.0
Clacu03g0162 . 69 142 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.5e-38 155.6
Clacu09g2023 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.3e-36 151.0
Clacu10g2073 . 54 136 C2C2-Dof Transcription Factor Family AT3G55370 81.9 1.9e-37 153.7
Clacu02g2084 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.6e-37 152.1
Clacu04g0873 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.2e-36 151.0
Clacu06g1644 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.6 1.7e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46935 PF02701 zf-Dof 4.40E-33 No_clan Clacu TF