Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0161 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGCCCAAAACCAAGTGTTTCAATTTTAGAGAGGAAGATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAATTATAGCCTTACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGCTCCTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAAAGACCTTCTTCTTCATCATCATCTACATCTCCCACACCTTCTTCATCTCAACCTATTCCCAAGAAAATTCTTGATCTCCCTCAAAACCCTAAATCCACCCAAGATCTCAACTTGTTCTTCCCACCCTCGAACCATCAAGATCATCATCATTTCATCACCAATAGCCACCCCGAAATCGTTGCCCCTGCGATTGCCAGTTCCTCATCAGCCTCTACTGTTGCGACGGCGGCGGTGTCGTCGTCGCCTTCGGCCCCATCGCATCATCATCCGCTTTCGGCAATGGAGCTTCTCGCCGGGATGGCGAACAACAACAACAACAATTCTAGGGGTTTGAATTGTTTCTTTCCAATGTCGTCTGTTGTTGTCCCTGATCCAGCTGGCTCCCTTTACACGGTAGGGTTTCCCGATCTCCATGATCAGTTCAAGTCAAACCTCGGATTATTCTCTCTTGATGGCTACAGCGTTGTCCCGACCGAGGGAAGCAAGGGTGGGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGGAGTTGAACAAGGCAAAGAGCAAGGAGAGCATAATTCAAGTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 912 45.83 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSSTSPTPSSSQPIPKKILDLPQNPKSTQDLNLFFPPSNHQDHHHFITNSHPEIVAPAIASSSSASTVATAAVSSSPSAPSHHHPLSAMELLAGMANNNNNNSRGLNCFFPMSSVVVPDPAGSLYTVGFPDLHDQFKSNLGLFSLDGYSVVPTEGSKGGGRLMQLPFEDLKQGSNGGVEQGKEQGEHNSSGYWNGMLGGGSW 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1613349 1614796 - ClG42_01g0016100.10 Clacu01g0161 239545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0161 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 179 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0161 303 MobiDBLite consensus disorder prediction 94 134 - -
Clacu01g0161 303 MobiDBLite consensus disorder prediction 84 134 - -
Clacu01g0161 303 MobiDBLite consensus disorder prediction 272 303 - -
Clacu01g0161 303 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g0161 303 MobiDBLite consensus disorder prediction 278 297 - -
Clacu01g0161 303 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g0161 303 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0161 Clacu-Chr1:1613349 Clacu02g2141 Clacu-Chr2:34595191 2.30E-33 dispersed
Clacu01g0161 Clacu-Chr1:1613349 Clacu01g0028 Clacu-Chr1:271276 2.10E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46935 PF02701 zf-Dof 4.40E-33 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0161 - - - 0.0