Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0162 ATGAGTAAAGTAAAAGTATTCTTTGCCTCCGCATCTGGTAACTCCTCTGGAAAGAAGAGTCCAAAGAGAGGAAGAGCCCCAGATGGGTTTGACCCGAGTTTTGGGGTGACCCAGAGTCGTGATTGTGTTTACTGTGGTTGTTTTGGGGTTGGTCAATTTTGTGGACTGATTCGATGTTCCTGTTTTGATTATATTGATGGGTTTGTGACCGTGGATCTAACGTCAGGATGCCATGGATTTGAATCGAAGAGGAGGGGTCAAGAGAGAGAACAGATGATGGATTTGATTTACCGTGAGGAGGAAATTGAAAGATTCTACGACACCCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGAACTGCAGCACAAGTTTTGGGGATGACGGTGATATTCCTGAAAGTTTAAGATACGTGGGATGGATAGGTAATCTGGAAAGTGTTTGTGAGCGAAGAAACAAGTTCTTCAAATGGATGGGTTTGGATTTGAATCAGACTTTTGACGACAGAGATGAAGAGGAAGGGGATTCGTTCAGGAGGGTTTATCGTGATAGAATTCTGGAAGATTGTGGAACGGTGTTGAGACTTTCCGGTTCTGAAGAGGAGTTGTCTTCAAGTCTTACTATGTCTTCCATGTCAAATGAAGCTCCAGAATCATCAGGAAATGTTTCGGTGGAGGAGAATCATGTTTATACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAGTCAAGATGGAGTGTTGAGCATGTTACGTGAAGTTGGTTCAAACCGATCCTTCAGTTTTGATGAGTTTGAGAGAAACATTGGGCAGTCTCCCTTGGTTCAGCAATTCTTTCGCAAAAATGTTGAAAAGGCTGGGCCTATAGTCAATGCCAGGAAAGAGGCAAAGAAGGGTTGGCTGAGAAAATTGGGTGCGGTTGCTTGTATAGTTGACAATGGGGTGGGCGCAATGAAAAACGGTGTTTCCAATTCTTCACCTAAGGCAGGGATACAACAAGTTCGCGTTCATCCATATAAAAAGCAATCCAAAGAATTATCATCCCTTTTTGTGGGACAAGAATTTGAAGCACACAAAGGGTCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGATACTTGGCTACTGCTGGTGAAGATGGTGTTGTGCGTGTATGGCAGGTGATTGAAGATGTGAGATTCGATAATTTCGACATTCACAATGTTGATCCTTCCTCTTTGTACTTCTCAATGAATCATTTGTCCAAATTAGACCCCTTGGATGTACCAAAAGAGACTGTAGGCAAGACAAAATTGAAGAGATCATCAAGCACAGCCTGTGTAATTTTTCCACCAAAGCTATTTAGGATATTGGAGAAACCTCTGCATGAGTTCTTGGGACACAGTGGCGAGGTCTTGGATCTATCTTGGTCAAAGAAAGGGCTTCTGCTGTCATCTTCTGTTGATAAGACAGTACGCCTTTGGCAGCTGGGATGTGACACATGCCTAAGAGTTTACTGTCATAATAATTATGTTACGTGCGTTAGTTTCAATCCTATAGATGAAAATCATTTCATAAGTGGCTCAATAGACGGTAAAGTTCGGATTTGGGAAGTTCTTGCTTGTCAAGTGGTTGATTATATCGATATCCGTGAGATAGTAAGCGCAGTCTGTTACAGACCAGATGGAAAGGGAGGAATTGTGGGGTCCATGACTGGAAACTGCCGTTTTTATAACATTATAGATAATCGATTGGAGCTGGATGCTCAGATATGCTTAAATGGGAAAAAGAAGTCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGTGACCCGAGTAAACTAATGGTCTGTTCTGTTGATTCGCCGGTTCATATAATTTCCGGGAGTGATGTCATTTGCAAATTCAAGGGTCTTCGTAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCGGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACGTCTACGTTTGGAACTACAATTGCAAGGACAAAGCATCTTGGAAAAAGAAAATTTGGTCGTCCGAAAGTTTCTTCTCTCGTAGCGCATCAATAGCCATACCTTGGTCTGGTGTGAAAATCACACCTGAACCACCACTGTCCCCAACACGAGTTTGCGATACAGCGGGAAGTATCCCCGAAATGGAGCCGAAGTATCCTGATGACGATGGTGATAGAGAACACAAGGTTCCGTCATCATCACCAGATTGCTTCTCTCTAAGTCGCACTCTTTTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCGGAGGAGAAACTCCATGATTCTAGCTCAATGATCCCTTCCCCTTCAATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCTTGCCAGAGCATGCTTAGCTCTCCGCACATGTGGGGTCTTGTGATCGTAACTGCTGGATGGGACGGACGAATCAGAACATTTCTCAACTACGGTTGTCGAGATATCGAGATTAAACTGGAAGGGGATGTTGGGATAATACAGAGGCATCTATCTGGTGGGGCTTTTGCTTTGCCTGTCCCTAAATATGGATAA 2583 43.09 MSKVKVFFASASGNSSGKKSPKRGRAPDGFDPSFGVTQSRDCVYCGCFGVGQFCGLIRCSCFDYIDGFVTVDLTSGCHGFESKRRGQEREQMMDLIYREEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPESLRYVGWIGNLESVCERRNKFFKWMGLDLNQTFDDRDEEEGDSFRRVYRDRILEDCGTVLRLSGSEEELSSSLTMSSMSNEAPESSGNVSVEENHVYTIRNLDNGTEFIVDSFSQDGVLSMLREVGSNRSFSFDEFERNIGQSPLVQQFFRKNVEKAGPIVNARKEAKKGWLRKLGAVACIVDNGVGAMKNGVSNSSPKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGVVRVWQVIEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETVGKTKLKRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGSDVICKFKGLRNGGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASWKKKIWSSESFFSRSASIAIPWSGVKITPEPPLSPTRVCDTAGSIPEMEPKYPDDDGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSMIPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGCRDIEIKLEGDVGIIQRHLSGGAFALPVPKYG 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1647102 1652532 + ClG42_01g0016200.10 Clacu01g0162 239546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0162 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 467 499 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 541 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 397 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 SMART WD40_4 633 673 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 SMART WD40_4 592 632 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 SMART WD40_4 501 540 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 SMART WD40_4 357 396 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 SMART WD40_4 542 581 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 SMART WD40_4 460 498 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 MobiDBLite consensus disorder prediction 730 746 - -
Clacu01g0162 860 Pfam WD domain, G-beta repeat 503 539 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 Pfam WD domain, G-beta repeat 362 395 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 Pfam WD domain, G-beta repeat 462 497 IPR001680 GO:0005515(InterPro)
Clacu01g0162 860 Gene3D - 349 693 IPR015943 GO:0005515(InterPro)
Clacu01g0162 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 541 - -
Clacu01g0162 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 467 499 - -
Clacu01g0162 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 364 397 - -
Clacu01g0162 860 MobiDBLite consensus disorder prediction 9 31 - -
Clacu01g0162 860 MobiDBLite consensus disorder prediction 725 749 - -
Clacu01g0162 860 PANTHER WD REPEAT DOMAIN 44 103 829 IPR040324 -
Clacu01g0162 860 SUPERFAMILY WD40 repeat-like 360 823 IPR036322 GO:0005515(InterPro)
Clacu01g0162 860 PRINTS G protein beta WD-40 repeat signature 485 499 IPR020472 -
Clacu01g0162 860 PRINTS G protein beta WD-40 repeat signature 527 541 IPR020472 -
Clacu01g0162 860 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0030 Clacu-Chr1:303526 Clacu01g0162 Clacu-Chr1:1647102 6.10E-145 dispersed
Clacu01g0162 Clacu-Chr1:1647102 Clacu11g2004 Clacu-Chr11:30981930 1.50E-104 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34