Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0174 ATGTCTTCCGTTACCCAAACAACACGCATGCCGATGCCGTACTATTTCCATCGTCATCTAACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCAGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATCTCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCAGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTACAAGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAACCAGCATGCCACCATCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCCGTTTCAAAAAATAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGCACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGCTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTACCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGGAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCCACAAATACTGGACCCCACTGAAAATGGGAGGAACGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCTGTGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCAGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGGTTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGATGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCACTAGAAGTTGAAGGGGCTTTAGTAATCCCGGATTCCCCTGGACTATCTGAAGATCACGATGCCTGGCTAGCTGTCAAGAACAATGGGAGGTTGCAAAAAGCTTGTTGA 2361 44.85 MSSVTQTTRMPMPYYFHRHLTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYLSVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLADHESDEVYAQITLMPESDQNEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQTSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLAQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPTQSNSYKHPVHDMAQDYKTVPGVGWSFLLGTSTSHLVKLSDDPQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSCVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEVQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPLEVEGALVIPDSPGLSEDHDAWLAVKNNGRLQKAC 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1746566 1753599 + ClG42_01g0017400.10 Clacu01g0174 239558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0174 786 FunFam Auxin response factor 201 305 - -
Clacu01g0174 786 Gene3D - 364 437 - -
Clacu01g0174 786 Pfam B3 DNA binding domain 203 304 IPR003340 GO:0003677(InterPro)
Clacu01g0174 786 FunFam Auxin response factor 650 743 - -
Clacu01g0174 786 SMART B3_2 203 305 IPR003340 GO:0003677(InterPro)
Clacu01g0174 786 MobiDBLite consensus disorder prediction 614 659 - -
Clacu01g0174 786 SUPERFAMILY CAD & PB1 domains 650 731 - -
Clacu01g0174 786 Gene3D - 650 743 - -
Clacu01g0174 786 ProSiteProfiles PB1 domain profile. 655 736 IPR053793 -
Clacu01g0174 786 MobiDBLite consensus disorder prediction 632 659 - -
Clacu01g0174 786 SUPERFAMILY DNA-binding pseudobarrel domain 194 332 IPR015300 -
Clacu01g0174 786 ProSiteProfiles B3 DNA-binding domain profile. 203 305 IPR003340 GO:0003677(InterPro)
Clacu01g0174 786 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 97 744 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu01g0174 786 Pfam AUX/IAA family 701 734 IPR033389 -
Clacu01g0174 786 Pfam AUX/IAA family 644 691 IPR033389 -
Clacu01g0174 786 Pfam Auxin response factor 329 407 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu01g0174 786 FunFam Auxin response factor 364 435 - -
Clacu01g0174 786 MobiDBLite consensus disorder prediction 434 485 - -
Clacu01g0174 786 CDD B3_DNA 201 303 IPR003340 GO:0003677(InterPro)
Clacu01g0174 786 Gene3D - 200 305 IPR015300 -
Clacu01g0174 786 MobiDBLite consensus disorder prediction 434 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0174 Clacu-Chr1:1746566 Clacu07g1150 Clacu-Chr7:26172365 1.60E-222 dispersed
Clacu01g0174 Clacu-Chr1:1746566 Clacu09g0945 Clacu-Chr9:8817222 2.10E-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46938 PF02362 B3 4.80E-21 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0174 K14486 - csv:101209208 1270.76